HL_8JDK_096
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- UAUUUUGUUGGUUUUCG
- Length
- 17 nucleotides
- Bulged bases
- 8JDK|1|w|G|891, 8JDK|1|w|U|896, 8JDK|1|w|U|899
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDK_096 not in the Motif Atlas
- Geometric match to HL_5TBW_022
- Geometric discrepancy: 0.2945
- The information below is about HL_5TBW_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8JDK|1|w|U|885
8JDK|1|w|A|886
8JDK|1|w|U|887
8JDK|1|w|U|888
8JDK|1|w|U|889
8JDK|1|w|U|890
8JDK|1|w|G|891
8JDK|1|w|U|892
8JDK|1|w|U|893
8JDK|1|w|G|894
8JDK|1|w|G|895
8JDK|1|w|U|896
8JDK|1|w|U|897
8JDK|1|w|U|898
8JDK|1|w|U|899
8JDK|1|w|C|900
8JDK|1|w|G|901
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 3
- 40S ribosomal protein S6
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