HL_8JDK_106

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

G(PSU)UAAUUC

Length

8 nucleotides

Bulged bases

8JDK|1|w|U|1371

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_106 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.3389

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8JDK|1|w|G|1366
8JDK|1|w|PSU|1367
8JDK|1|w|U|1368
8JDK|1|w|A|1369
8JDK|1|w|A|1370
8JDK|1|w|U|1371
8JDK|1|w|U|1372
8JDK|1|w|C|1373

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AD

40S ribosomal protein S17