HL_8JDK_116

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

8JDK|1|D|C|1325

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_116 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0705

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8JDK|1|D|U|1317
8JDK|1|D|C|1318
8JDK|1|D|U|1319
8JDK|1|D|U|1320
8JDK|1|D|G|1321
8JDK|1|D|1MA|1322
8JDK|1|D|A|1323
8JDK|1|D|A|1324
8JDK|1|D|C|1325
8JDK|1|D|A2M|1326

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain f

60S ribosomal protein L27a

Chain j

60S ribosomal protein L32