HL_8JDK_122
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDK_122 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.1425
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8JDK|1|E|A|32
8JDK|1|E|U|33
8JDK|1|E|C|34
8JDK|1|E|U|35
8JDK|1|E|C|36
8JDK|1|E|G|37
8JDK|1|E|U|38
8JDK|1|E|C|39
8JDK|1|E|U|40
8JDK|1|E|G|41
8JDK|1|E|A|42
8JDK|1|E|U|43
8JDK|1|E|C|44
8JDK|1|E|U|45
Current chains
- Chain E
- 5S ribosomal RNA
Nearby chains
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- 60S ribosomal protein L5
- Chain P
- 60S ribosomal protein L11
Coloring options: