HL_8JDK_128
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- AUUGCAAUUAU(PSU)
- Length
- 12 nucleotides
- Bulged bases
- 8JDK|1|w|U|1621, 8JDK|1|w|U|1622, 8JDK|1|w|A|1623
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDK_128 not in the Motif Atlas
- Homologous match to HL_8C3A_224
- Geometric discrepancy: 0.2128
- The information below is about HL_8C3A_224
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.2
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8JDK|1|w|A|1614
8JDK|1|w|U|1615
8JDK|1|w|U|1616
8JDK|1|w|G|1617
8JDK|1|w|C|1618
8JDK|1|w|A|1619
8JDK|1|w|A|1620
8JDK|1|w|U|1621
8JDK|1|w|U|1622
8JDK|1|w|A|1623
8JDK|1|w|U|1624
8JDK|1|w|PSU|1625
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain AB
- 40S ribosomal protein S15
- Chain AE
- 40S ribosomal protein S18
- Chain AP
- 40S ribosomal protein S29
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