HL_8JDL_001

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CAG(H2U)(H2U)GG(3AU)AG

Length

10 nucleotides

Bulged bases

8JDL|1|B|G|18, 8JDL|1|B|G|19

QA status

Modified nucleotides: H2U, 3AU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDL_001 not in the Motif Atlas

Homologous match to HL_4V90_032

Geometric discrepancy: 0.1653

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

8JDL|1|B|C|13
8JDL|1|B|A|14
8JDL|1|B|G|15
8JDL|1|B|H2U|16
8JDL|1|B|H2U|17
8JDL|1|B|G|18
8JDL|1|B|G|19
8JDL|1|B|3AU|20
8JDL|1|B|A|21
8JDL|1|B|G|22

Current chains

Chain B

tRNA (Tyr)

Nearby chains

Chain D

Large subunit ribosomal RNA; LSU rRNA

Chain P

60S ribosomal protein L11

Chain t

60S ribosomal protein L36a