HL_8JDL_072

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

8JDL|1|D|C|5023

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDL_072 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.3993

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

8JDL|1|D|C|5021
8JDL|1|D|U|5022
8JDL|1|D|C|5023
8JDL|1|D|C|5024
8JDL|1|D|C|5025
8JDL|1|D|U|5026
8JDL|1|D|C|5027
8JDL|1|D|G|5028

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain 5

40S ribosomal protein S8

Chain Z

60S ribosomal protein L22