HL_8JDL_081

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

8JDL|1|w|A|158, 8JDL|1|w|U|160, 8JDL|1|w|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDL_081 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3935

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8JDL|1|w|G|156
8JDL|1|w|U|157
8JDL|1|w|A|158
8JDL|1|w|A2M|159
8JDL|1|w|U|160
8JDL|1|w|U|161
8JDL|1|w|C|162

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 3

40S ribosomal protein S6

Chain AK

40S ribosomal protein S24