HL_8JDL_093

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

8JDL|1|w|G|891, 8JDL|1|w|U|896, 8JDL|1|w|U|899

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDL_093 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3308

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8JDL|1|w|U|885
8JDL|1|w|A|886
8JDL|1|w|U|887
8JDL|1|w|U|888
8JDL|1|w|U|889
8JDL|1|w|U|890
8JDL|1|w|G|891
8JDL|1|w|U|892
8JDL|1|w|U|893
8JDL|1|w|G|894
8JDL|1|w|G|895
8JDL|1|w|U|896
8JDL|1|w|U|897
8JDL|1|w|U|898
8JDL|1|w|U|899
8JDL|1|w|C|900
8JDL|1|w|G|901

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 3

40S ribosomal protein S6