HL_8JDM_002
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GACU(56B)(PSU)A(1MG)A(UY1)C
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 56B, PSU, 1MG, UY1
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDM_002 not in the Motif Atlas
- Geometric match to HL_6GSL_238
- Geometric discrepancy: 0.3589
- The information below is about HL_6GSL_238
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36684.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8JDM|1|B|G|30
8JDM|1|B|A|31
8JDM|1|B|C|32
8JDM|1|B|U|33
8JDM|1|B|56B|34
8JDM|1|B|PSU|35
8JDM|1|B|A|36
8JDM|1|B|1MG|37
8JDM|1|B|A|38
8JDM|1|B|UY1|39
8JDM|1|B|C|40
Current chains
- Chain B
- tRNA (Tyr)
Nearby chains
- Chain A
- mRNA
- Chain AB
- 40S ribosomal protein S15
- Chain AC
- 40S ribosomal protein S16
- Chain AE
- 40S ribosomal protein S18
- Chain w
- Small subunit ribosomal RNA; SSU rRNA
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