Motif HL_36684.4 Version HL_36684.4 of this group appears in releases 3.96 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 3-10 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V7M_039 | 4V7M | 0.4227 | 0 | AY | tRNA | G | 29 | A | 30 | U | 31 | U | 32 | G | 33 | U | 34 | G | 35 | A | 36 | U | 37 | U | 38 | C | 39 | ncWW | ncWH | ncwW | |
| 2 | HL_5IB8_208 | 5IB8 | 0.0000 | 0 | 1L | tRNA | G | 30 | A | 31 | C | 32 | U | 33 | U | 34 | U | 35 | U | 36 | A | 37 | A | 38 | U | 39 | C | 40 | cWW | ntSH | ||
| 3 | HL_7K16_002 | 7K16 | 0.3434 | 0 | P | RNA (51-MER) | G | 27 | C | 28 | U | 29 | U | 30 | G | 31 | A | 32 | G | 33 | A | 34 | A | 35 | C | 36 | C | 37 | cWW | ncWB | ||
| 4 | HL_4UYK_001 | 4UYK | 0.4360 | 0 | R | SRP RNA | G | 21 | G | 22 | U | 23 | U | 24 | C | 25 | G | 26 | G | 27 | C | 28 | G | 29 | U | 30 | C | 31 | cWW | |||
| 5 | HL_4WSM_225 | 4WSM | 0.5100 | 0 | 3L | tRNA | C | 31 | C | 32 | U | 33 | U | 34 | G | 35 | A | 36 | G | 37 | G | 38 | U | 39 | G | 40 | G | 41 | cWW | cSW | ||
| 6 | HL_6GSK_218 | 6GSK | 0.4699 | 0 | 3L | tRNA | C | 30 | C | 31 | U | 32 | U | 33 | G | 34 | G | 35 | U | 36 | A | 37 | A | 38 | G | 39 | G | 40 | cWW | ncSW | ntSH | |
| 7 | HL_6GSL_238 | 6GSL | 0.4536 | 0 | 3L | tRNA | G | 31 | G | 32 | C | 33 | U | 34 | A | 35 | C | 36 | G | 37 | A | 38 | A | 39 | C | 40 | C | 41 | ncWW | ncWw |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUUGUGAUUC | 1 |
| GACUUUUAAUC | 1 |
| GCUUGAGAACC | 1 |
| GGUUCGGCGUC | 1 |
| CCUUGAGGUGG | 1 |
| CCUUGGUAAGG | 1 |
| GGCUACGAACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUGUGAUU | 1 |
| ACUUUUAAU | 1 |
| CUUGAGAAC | 1 |
| GUUCGGCGU | 1 |
| CUUGAGGUG | 1 |
| CUUGGUAAG | 1 |
| GCUACGAAC | 1 |
Release history
| Release | 3.96 |
|---|---|
| Date | 2025-04-23 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.34 | Avg 0.42 | Max 0.66
Coloring options: