RNA 3D Hub //

Motif HL_36684.4 Version HL_36684.4 of this group appears in releases 3.96 to 3.97

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 8 9 10 111-112-103-93-10
1 HL_4V7M_0394V7M0.42270AY tRNAG29A30U31U32G33U34G35A36U37U38C39ncWWncWHncwW
2 HL_5IB8_2085IB80.000001L tRNAG30A31C32U33U34U35U36A37A38U39C40cWWntSH
3 HL_7K16_0027K160.34340PRNA (51-MER)G27C28U29U30G31A32G33A34A35C36C37cWWncWB
4 HL_4UYK_0014UYK0.43600RSRP RNAG21G22U23U24C25G26G27C28G29U30C31cWW
5 HL_4WSM_2254WSM0.510003L tRNAC31C32U33U34G35A36G37G38U39G40G41cWWcSW
6 HL_6GSK_2186GSK0.469903L tRNAC30C31U32U33G34G35U36A37A38G39G40cWWncSWntSH
7 HL_6GSL_2386GSL0.453603L tRNAG31G32C33U34A35C36G37A38A39C40C41ncWWncWw

3D structures

Complete motif including flanking bases
SequenceCounts
GAUUGUGAUUC1
GACUUUUAAUC1
GCUUGAGAACC1
GGUUCGGCGUC1
CCUUGAGGUGG1
CCUUGGUAAGG1
GGCUACGAACC1
Non-Watson-Crick part of the motif
SequenceCounts
AUUGUGAUU1
ACUUUUAAU1
CUUGAGAAC1
GUUCGGCGU1
CUUGAGGUG1
CUUGGUAAG1
GCUACGAAC1

Release history

Release3.963.97
Date2025-04-232025-05-21
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (7)
    • Basepair signature
    cWW-F-F-F-F-F-F-F-F-F
    Heat map statistics
    Min 0.34 | Avg 0.42 | Max 0.66
    Help

    Coloring options:

    HL_4V7M_039:HL_4V7M_039 = 0HL_4V7M_039:HL_5IB8_208 = 0.4227HL_4V7M_039:HL_7K16_002 = 0.6168HL_4V7M_039:HL_4UYK_001 = 0.6416HL_4V7M_039:HL_4WSM_225 = 0.6378HL_4V7M_039:HL_6GSK_218 = 0.6569HL_4V7M_039:HL_6GSL_238 = 0.5267HL_5IB8_208:HL_4V7M_039 = 0.4227HL_5IB8_208:HL_5IB8_208 = 0HL_5IB8_208:HL_7K16_002 = 0.3434HL_5IB8_208:HL_4UYK_001 = 0.436HL_5IB8_208:HL_4WSM_225 = 0.51HL_5IB8_208:HL_6GSK_218 = 0.4699HL_5IB8_208:HL_6GSL_238 = 0.4536HL_7K16_002:HL_4V7M_039 = 0.6168HL_7K16_002:HL_5IB8_208 = 0.3434HL_7K16_002:HL_7K16_002 = 0HL_7K16_002:HL_4UYK_001 = 0.3505HL_7K16_002:HL_4WSM_225 = 0.5653HL_7K16_002:HL_6GSK_218 = 0.5833HL_7K16_002:HL_6GSL_238 = 0.57HL_4UYK_001:HL_4V7M_039 = 0.6416HL_4UYK_001:HL_5IB8_208 = 0.436HL_4UYK_001:HL_7K16_002 = 0.3505HL_4UYK_001:HL_4UYK_001 = 0HL_4UYK_001:HL_4WSM_225 = 0.4682HL_4UYK_001:HL_6GSK_218 = 0.511HL_4UYK_001:HL_6GSL_238 = 0.4781HL_4WSM_225:HL_4V7M_039 = 0.6378HL_4WSM_225:HL_5IB8_208 = 0.51HL_4WSM_225:HL_7K16_002 = 0.5653HL_4WSM_225:HL_4UYK_001 = 0.4682HL_4WSM_225:HL_4WSM_225 = 0HL_4WSM_225:HL_6GSK_218 = 0.3665HL_4WSM_225:HL_6GSL_238 = 0.4157HL_6GSK_218:HL_4V7M_039 = 0.6569HL_6GSK_218:HL_5IB8_208 = 0.4699HL_6GSK_218:HL_7K16_002 = 0.5833HL_6GSK_218:HL_4UYK_001 = 0.511HL_6GSK_218:HL_4WSM_225 = 0.3665HL_6GSK_218:HL_6GSK_218 = 0HL_6GSK_218:HL_6GSL_238 = 0.3477HL_6GSL_238:HL_4V7M_039 = 0.5267HL_6GSL_238:HL_5IB8_208 = 0.4536HL_6GSL_238:HL_7K16_002 = 0.57HL_6GSL_238:HL_4UYK_001 = 0.4781HL_6GSL_238:HL_4WSM_225 = 0.4157HL_6GSL_238:HL_6GSK_218 = 0.3477HL_6GSL_238:HL_6GSL_238 = 0HL_4V7M_039HL_5IB8_208HL_7K16_002HL_4UYK_001HL_4WSM_225HL_6GSK_218HL_6GSL_238Discrepancy0.000.100.200.300.400.500.60
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