HL_8JDM_024

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDM|1|D|C|1436
8JDM|1|D|C|1437
8JDM|1|D|U|1438
8JDM|1|D|C|1439
8JDM|1|D|U|1440
8JDM|1|D|C|1441
8JDM|1|D|C|1442
8JDM|1|D|A|1443
8JDM|1|D|G|1444
8JDM|1|D|U|1445
8JDM|1|D|C|1446
8JDM|1|D|C|1447
8JDM|1|D|G|1448

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L4

Chain L

60S ribosomal protein L7

Chain V

60S ribosomal protein L18

Chain g

60S ribosomal protein L29