HL_8JDM_024
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- CCUCUCCAGUCCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDM_024 not in the Motif Atlas
- Homologous match to HL_8GLP_020
- Geometric discrepancy: 0.4653
- The information below is about HL_8GLP_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_20751.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8JDM|1|D|C|1436
8JDM|1|D|C|1437
8JDM|1|D|U|1438
8JDM|1|D|C|1439
8JDM|1|D|U|1440
8JDM|1|D|C|1441
8JDM|1|D|C|1442
8JDM|1|D|A|1443
8JDM|1|D|G|1444
8JDM|1|D|U|1445
8JDM|1|D|C|1446
8JDM|1|D|C|1447
8JDM|1|D|G|1448
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain I
- 60S ribosomal protein L4
- Chain L
- 60S ribosomal protein L7
- Chain V
- 60S ribosomal protein L18
- Chain g
- 60S ribosomal protein L29
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