HL_8JDM_033
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- 8JDM|1|D|A|1891, 8JDM|1|D|A|1892
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDM_033 not in the Motif Atlas
- Homologous match to HL_5TBW_026
- Geometric discrepancy: 0.0982
- The information below is about HL_5TBW_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8JDM|1|D|G|1886
8JDM|1|D|G|1887
8JDM|1|D|A|1888
8JDM|1|D|U|1889
8JDM|1|D|G|1890
8JDM|1|D|A|1891
8JDM|1|D|A|1892
8JDM|1|D|C|1893
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain L
- 60S ribosomal protein L7
- Chain j
- 60S ribosomal protein L32
- Chain k
- 60S ribosomal protein L35a
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