HL_8JDM_049

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8JDM|1|D|U|2874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDM_049 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0695

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8JDM|1|D|C|2872
8JDM|1|D|U|2873
8JDM|1|D|U|2874
8JDM|1|D|C|2875
8JDM|1|D|G|2876
8JDM|1|D|G|2877

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain s

60S ribosomal protein L41

Chain u

60S ribosomal protein L37a

Chain w

Small subunit ribosomal RNA; SSU rRNA