HL_8JDM_087

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

8JDM|1|w|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDM|1|w|G|377
8JDM|1|w|U|378
8JDM|1|w|C|379
8JDM|1|w|G|380
8JDM|1|w|C|381
8JDM|1|w|C|382
8JDM|1|w|G|383
8JDM|1|w|U|384
8JDM|1|w|G|385
8JDM|1|w|C|386
8JDM|1|w|C|387

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 5

40S ribosomal protein S8

Chain 8

40S ribosomal protein S11