HL_8JDM_096

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

8JDM|1|w|G|891, 8JDM|1|w|U|896, 8JDM|1|w|U|899

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDM_096 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.2399

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8JDM|1|w|U|885
8JDM|1|w|A|886
8JDM|1|w|U|887
8JDM|1|w|U|888
8JDM|1|w|U|889
8JDM|1|w|U|890
8JDM|1|w|G|891
8JDM|1|w|U|892
8JDM|1|w|U|893
8JDM|1|w|G|894
8JDM|1|w|G|895
8JDM|1|w|U|896
8JDM|1|w|U|897
8JDM|1|w|U|898
8JDM|1|w|U|899
8JDM|1|w|C|900
8JDM|1|w|G|901

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 3

40S ribosomal protein S6