HL_8JDM_103
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GAC(B8N)CAACAC
- Length
- 10 nucleotides
- Bulged bases
- 8JDM|1|w|A|1253
- QA status
- Modified nucleotides: B8N
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDM_103 not in the Motif Atlas
- Homologous match to HL_8P9A_215
- Geometric discrepancy: 0.1064
- The information below is about HL_8P9A_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8JDM|1|w|G|1245
8JDM|1|w|A|1246
8JDM|1|w|C|1247
8JDM|1|w|B8N|1248
8JDM|1|w|C|1249
8JDM|1|w|A|1250
8JDM|1|w|A|1251
8JDM|1|w|C|1252
8JDM|1|w|A|1253
8JDM|1|w|C|1254
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain AB
- 40S ribosomal protein S15
- Chain AC
- 40S ribosomal protein S16
- Chain AG
- 40S ribosomal protein S20
- Chain AP
- 40S ribosomal protein S29
- Chain B
- Transfer RNA; tRNA
- Chain C
- Transfer RNA; tRNA
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