HL_8JOZ_001
3D structure
- PDB id
- 8JOZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of CmoM from E. coli complexed with sinefungin and cellularly expressed tRNA Ser
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.22 Å
Loop
- Sequence
- CGAGC(OMG)G(H2U)(H2U)GAAG
- Length
- 13 nucleotides
- Bulged bases
- 8JOZ|1|B|C|16, 8JOZ|1|B|G|19
- QA status
- Modified nucleotides: OMG, H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40252.4
- Basepair signature
- cWW-tSH-cWS-F
- Number of instances in this motif group
- 5
Unit IDs
8JOZ|1|B|C|12
8JOZ|1|B|G|13
8JOZ|1|B|A|14
8JOZ|1|B|G|15
8JOZ|1|B|C|16
8JOZ|1|B|OMG|18
8JOZ|1|B|G|19
8JOZ|1|B|H2U|20
8JOZ|1|B|H2U|20|||A
8JOZ|1|B|G|20|||B
8JOZ|1|B|A|21
8JOZ|1|B|A|22
8JOZ|1|B|G|23
Current chains
- Chain B
- tRNA Ser (88-MER)
Nearby chains
No other chains within 10ÅColoring options: