HL_8JSG_008

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JSG_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1716

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8JSG|1|g|A|320
8JSG|1|g|A|321
8JSG|1|g|C|322
8JSG|1|g|U|323
8JSG|1|g|G|324
8JSG|1|g|A|325
8JSG|1|g|G|326
8JSG|1|g|A|327
8JSG|1|g|C|328
8JSG|1|g|A|329
8JSG|1|g|C|330
8JSG|1|g|G|331
8JSG|1|g|G|332
8JSG|1|g|U|333

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 3

Small ribosomal subunit protein bS20

Chain y

30S ribosomal protein S16