RNA 3D Hub //

8JSG Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8JSG_0011/g/12:22No text annotation
homologous
HL_5J7L_001
NA
HL_8JSG_0061/g/259:267GNRA related
homologous
HL_5J7L_006
NA
HL_8JSG_0081/g/320:333No text annotation
homologous
HL_4LFB_008
HL_39665.1
HL_8JSG_0141/g/617:623GNRA-like with tWH
homologous
HL_4LFB_014
HL_92337.1

Problematic loops

#loop idProblemSequence
HL_8JSG_002No text annotation
HL_8JSG_003GNRA
HL_8JSG_004GNRA
HL_8JSG_005UNCG
HL_8JSG_007GNRA
HL_8JSG_009UNCG
HL_8JSG_010GNRA
HL_8JSG_011UNCG
HL_8JSG_012GNRA wlth extra near cWW
HL_8JSG_013No text annotation
HL_8JSG_015No text annotation
HL_8JSG_016GNRA
HL_8JSG_017No text annotation
HL_8JSG_018Externally structured
HL_8JSG_019GNRA
HL_8JSG_020GNRA
HL_8JSG_021No text annotation
HL_8JSG_022No text annotation
HL_8JSG_023Externally structured
HL_8JSG_024GNRA
HL_8JSG_025T-loop related
HL_8JSG_026Externally structured
HL_8JSG_027GNRA
HL_8JSG_028No text annotation
HL_8JSG_029No text annotation
HL_8JSG_030No text annotation
HL_8JSG_031UNCG
HL_8JSG_033No text annotation
HL_8JSG_032GNRA

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8JSG_0011/g/30:32,
1/g/552:553		Single bulged G
homologous
IL_5J7L_001
NA
IL_8JSG_0021/g/44:45,
1/g/396:398		Single bulged A
homologous
IL_5J7L_002
NA
IL_8JSG_0031/g/47:52,
1/g/359:361		No text annotation
homologous
IL_5J7L_003
NA
IL_8JSG_0061/g/63:66,
1/g/103:104		Multiple bulged bases
homologous
IL_5J7L_005
NA
IL_8JSG_0871/g/128:131,
1/g/231:233		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
NA
IL_8JSG_0171/g/242:247,
1/g/277:284		Kink-turn with non-sequential stacking
geometric
IL_4V88_402
NA
IL_8JSG_0201/g/367:369,
1/g/392:393		Single bulged U
homologous
IL_5J7L_017
NA
IL_8JSG_0221/g/375:376,
1/g/387:389		Single bulged G
geometric
IL_4LFB_016
IL_28408.1
IL_8JSG_0251/g/440:442,
1/g/492:497		No text annotation
homologous
IL_5J7L_021
NA
IL_8JSG_0261/g/446:450,
1/g/483:488		tSH-tHW-tWW
homologous
IL_5J7L_022
NA
IL_8JSG_0301/g/515:521,
1/g/528:536		Kink-turn related
homologous
IL_5J7L_025
NA
IL_8JSG_0311/g/569:575,
1/g/880:881		No text annotation
homologous
IL_4LFB_022
IL_20847.1
IL_8JSG_0801/g/580:584,
1/g/757:761		tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_8JSG_0471/g/887:894,
1/g/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_84044.1

Problematic loops

#loop idProblemSequence
IL_8JSG_004Minor groove platform
IL_8JSG_078No text annotation
IL_8JSG_005No text annotation
IL_8JSG_007Minor groove platform with extra cWW
IL_8JSG_008No text annotation
IL_8JSG_009Single bulged G
IL_8JSG_079Tandem non-canonical cWW pairs
IL_8JSG_010Isolated non-canonical cWW pair
IL_8JSG_011Tandem non-canonical cWW pairs
IL_8JSG_012No text annotation
IL_8JSG_013Isolated non-canonical cWW pair
IL_8JSG_014Isolated cWH basepair
IL_8JSG_015tWH-tWH-tHW-tHW
IL_8JSG_016Minor groove platform
IL_8JSG_018No text annotation
IL_8JSG_019C-loop
IL_8JSG_021C-loop
IL_8JSG_023Isolated non-canonical cWW pair
IL_8JSG_024No text annotation
IL_8JSG_027No text annotation
IL_8JSG_028No text annotation
IL_8JSG_029SSU/LSU pseudoknot
IL_8JSG_032Isolated cWH basepair
IL_8JSG_033No text annotation
IL_8JSG_034No text annotation
IL_8JSG_035Major groove minor groove platform; mini C-loop
IL_8JSG_036No text annotation
IL_8JSG_037Major groove platform; stack outside cWW
IL_8JSG_081No text annotation
IL_8JSG_038Tandem non-canonical cWW pairs
IL_8JSG_039Single stack bend
IL_8JSG_040Tandem non-canonical cWW pairs
IL_8JSG_082No text annotation
IL_8JSG_041No text annotation
IL_8JSG_042No text annotation
IL_8JSG_088Left turn
IL_8JSG_043Other IL
IL_8JSG_044tSH-tHW-tHS
IL_8JSG_045Isolated non-canonical cWW pair
IL_8JSG_046No text annotation
IL_8JSG_048Isolated non-canonical cWW pair
IL_8JSG_049No text annotation
IL_8JSG_083No text annotation
IL_8JSG_050Isolated non-canonical cWW pair
IL_8JSG_051No text annotation
IL_8JSG_052Isolated non-canonical cWW pair
IL_8JSG_053No text annotation
IL_8JSG_054No text annotation
IL_8JSG_055No text annotation
IL_8JSG_056No text annotation
IL_8JSG_084No text annotation
IL_8JSG_057No text annotation
IL_8JSG_058Single bulged U
IL_8JSG_059Isolated non-canonical cWW pair
IL_8JSG_060No text annotation
IL_8JSG_061No text annotation
IL_8JSG_062No text annotation
IL_8JSG_063No text annotation
IL_8JSG_064No text annotation
IL_8JSG_085No text annotation
IL_8JSG_065180 degree turn
IL_8JSG_086No text annotation
IL_8JSG_066No text annotation
IL_8JSG_067No text annotation
IL_8JSG_068No text annotation
IL_8JSG_069No text annotation
IL_8JSG_070No text annotation
IL_8JSG_071Isolated non-canonical cWW pair
IL_8JSG_072Double sheared
IL_8JSG_073Isolated non-canonical cWW pair
IL_8JSG_074No text annotation
IL_8JSG_089Triple sheared related
IL_8JSG_075Single bulged A
IL_8JSG_076No text annotation
IL_8JSG_077Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8JSG_0091/g/46:47,
1/g/361:367,
1/g/393:395		No text annotation
geometric
J3_8C3A_082
NA
J3_8JSG_0101/g/46:52,
1/g/359:367,
1/g/393:395		No text annotation
homologous
J3_5J7L_050
NA
J3_8JSG_0111/g/586:588,
1/g/651:654,
1/g/754:755		No text annotation
geometric
J3_1KUQ_001
J3_01633.1
J3_8JSG_0121/g/586:588,
1/g/651:658,
1/g/748:755		No text annotation
J3_8JSG_0021/g/826:829,
1/g/857:861,
1/g/868:874		No text annotation
homologous
J3_5J7L_004
NA
J4_8JSG_0011/g/115:122,
1/g/239:240,
1/g/286:289,
1/g/311:312		No text annotation
homologous
J4_5J7L_001
NA
J4_8JSG_0031/g/575:577,
1/g/764:769,
1/g/810:821,
1/g/879:880		No text annotation
homologous
J4_5J7L_003
NA
J5_8JSG_0011/g/36:39,
1/g/403:408,
1/g/434:440,
1/g/497:500,
1/g/545:548		No text annotation
J5_8JSG_0021/g/36:39,
1/g/403:408,
1/g/434:442,
1/g/492:500,
1/g/545:548		No text annotation
J5_8JSG_0031/g/58:61,
1/g/106:113,
1/g/314:316,
1/g/337:339,
1/g/350:354		No text annotation
homologous
J5_4LFB_002
J5_58574.1

Problematic loops

#loop idProblemSequence
J3_8JSG_001No text annotation
J3_8JSG_013No text annotation
J3_8JSG_014No text annotation
J3_8JSG_003No text annotation
J3_8JSG_004No text annotation
J3_8JSG_005No text annotation
J3_8JSG_018No text annotation
J3_8JSG_015No text annotation
J3_8JSG_006No text annotation
J3_8JSG_019No text annotation
J3_8JSG_016No text annotation
J3_8JSG_007No text annotation
J3_8JSG_017No text annotation
J3_8JSG_008No text annotation
J4_8JSG_002No text annotation

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