RNA 3D Hub //

8JSG Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8JSG_0011/g/12:22No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_8JSG_0021/g/83:86No text annotation
HL_8JSG_0031/g/158:163GNRA
homologous
HL_4LFB_003
HL_37824.7
HL_8JSG_0041/g/186:191GNRA
homologous
HL_5J7L_004
HL_37824.7
HL_8JSG_0051/g/207:212UNCG
homologous
HL_5J7L_005
HL_34617.5
HL_8JSG_0061/g/259:267GNRA related
homologous
HL_5J7L_006
HL_84299.4
HL_8JSG_0071/g/296:301GNRA
homologous
HL_5J7L_007
HL_37824.7
HL_8JSG_0081/g/320:333No text annotation
homologous
HL_4LFB_008
HL_81205.3
HL_8JSG_0091/g/342:347UNCG
homologous
HL_5J7L_009
HL_34617.5
HL_8JSG_0101/g/379:384GNRA
homologous
HL_4LFB_010
HL_37824.7
HL_8JSG_0111/g/419:424UNCG
homologous
HL_5J7L_011
HL_34617.5
HL_8JSG_0121/g/462:470GNRA related
homologous
HL_5J7L_012
HL_81538.2
HL_8JSG_0131/g/522:527No text annotation
geometric
HL_2ZNI_001
HL_75660.5
HL_8JSG_0141/g/617:623No text annotation
homologous
HL_4LFB_014
HL_10453.3
HL_8JSG_0151/g/689:698No text annotation
geometric
HL_361D_002
HL_13963.3
HL_8JSG_0161/g/726:731GNRA
homologous
HL_5J7L_016
HL_37824.7
HL_8JSG_0171/g/786:796No text annotation
homologous
HL_5J7L_017
HL_75293.5
HL_8JSG_0181/g/840:846Externally structured
geometric
HL_8C3A_022
NA
HL_8JSG_0191/g/862:867GNRA
homologous
HL_6CZR_090
NA
HL_8JSG_0201/g/897:902GNRA
homologous
HL_6CZR_091
NA
HL_8JSG_0211/g/963:972No text annotation
HL_8JSG_0221/g/1012:1017No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_8JSG_0231/g/1028:1033Externally structured
geometric
HL_8C3A_022
NA
HL_8JSG_0241/g/1076:1081GNRA
homologous
HL_5J7L_023
HL_37824.7
HL_8JSG_0251/g/1089:1096T-loop related
homologous
HL_5J7L_024
HL_77436.5
HL_8JSG_0261/g/1134:1140Externally structured
geometric
HL_8C3A_022
NA
HL_8JSG_0271/g/1165:1171GNRA
homologous
HL_5J7L_026
HL_93535.1
HL_8JSG_0281/g/1265:1270No text annotation
homologous
HL_6CZR_099
NA
HL_8JSG_0291/g/1314:1323No text annotation
HL_8JSG_0301/g/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_8JSG_0311/g/1449:1454UNCG
homologous
HL_5J7L_030
HL_34617.5
HL_8JSG_0321/g/1515:1520GNRA
homologous
HL_6CZR_103
NA

Problematic loops

#loop idProblemSequence
HL_8JSG_033No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8JSG_0011/g/30:32,
1/g/552:553		Single bulged G
homologous
IL_5J7L_001
IL_00225.13
IL_8JSG_0021/g/44:45,
1/g/396:398		Single bulged A
homologous
IL_5J7L_002
IL_31462.6
IL_8JSG_0031/g/47:52,
1/g/359:361		No text annotation
homologous
IL_5J7L_003
IL_14177.2
IL_8JSG_0041/g/54:56,
1/g/356:357		Minor groove platform
geometric
IL_4LFB_004
IL_51454.3
IL_8JSG_0061/g/63:66,
1/g/103:104		Multiple bulged bases
homologous
IL_5J7L_005
IL_82107.4
IL_8JSG_0071/g/67:69,
1/g/99:102		Minor groove platform with extra cWW
homologous
IL_5J7L_006
IL_90351.1
IL_8JSG_0081/g/70:74,
1/g/96:98		No text annotation
geometric
IL_4LFB_066
NA
IL_8JSG_0091/g/75:76,
1/g/93:95		Single bulged G
geometric
IL_5DEA_002
IL_00225.13
IL_8JSG_0791/g/75:78,
1/g/91:95		Tandem non-canonical cWW pairs
geometric
IL_8C3A_018
NA
IL_8JSG_0871/g/128:131,
1/g/231:233		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
IL_57744.1
IL_8JSG_0121/g/132:136,
1/g/227:230		No text annotation
geometric
IL_4LFB_008
IL_64231.5
IL_8JSG_0141/g/144:146,
1/g/176:178		Isolated cWH basepair
homologous
IL_5J7L_011
IL_10167.6
IL_8JSG_0151/g/147:153,
1/g/168:175		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
IL_80604.6
IL_8JSG_0161/g/203:206,
1/g/213:214		Minor groove platform
geometric
IL_7RQB_073
NA
IL_8JSG_0171/g/242:247,
1/g/277:284		Kink-turn with non-sequential stacking
geometric
IL_4V88_402
NA
IL_8JSG_0181/g/249:253,
1/g/273:275		No text annotation
homologous
IL_6CZR_124
NA
IL_8JSG_0191/g/292:293,
1/g/304:308		C-loop
homologous
IL_4LFB_013
IL_03109.3
IL_8JSG_0201/g/367:369,
1/g/392:393		Single bulged U
homologous
IL_5J7L_017
IL_89505.4
IL_8JSG_0211/g/371:375,
1/g/389:390		C-loop
homologous
IL_4LFB_015
IL_03109.3
IL_8JSG_0221/g/375:376,
1/g/387:389		Single bulged G
geometric
IL_4LFB_016
IL_00225.13
IL_8JSG_0241/g/409:416,
1/g/427:433		No text annotation
homologous
IL_5J7L_020
IL_28026.3
IL_8JSG_0251/g/440:442,
1/g/492:497		No text annotation
homologous
IL_5J7L_021
IL_33323.1
IL_8JSG_0261/g/446:450,
1/g/483:488		tSH-tHW-tWW
homologous
IL_5J7L_022
IL_88269.4
IL_8JSG_0271/g/450:454,
1/g/479:483		No text annotation
IL_8JSG_0281/g/454:455,
1/g/477:479		No text annotation
IL_8JSG_0291/g/504:511,
1/g/540:541		SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_41203.4
IL_8JSG_0301/g/515:521,
1/g/528:536		Kink-turn related
homologous
IL_5J7L_025
IL_54177.4
IL_8JSG_0311/g/569:575,
1/g/880:881		No text annotation
homologous
IL_4LFB_022
IL_38186.6
IL_8JSG_0801/g/580:584,
1/g/757:761		tSH-tHW-tHS
homologous
IL_5J7L_027
IL_17136.7
IL_8JSG_0341/g/594:597,
1/g/643:645		No text annotation
homologous
IL_6CZR_136
NA
IL_8JSG_0351/g/597:598,
1/g/640:643		Major groove minor groove platform; mini C-loop
geometric
IL_6CZR_137
NA
IL_8JSG_0361/g/605:612,
1/g/628:633		No text annotation
homologous
IL_5J7L_030
IL_78349.3
IL_8JSG_0371/g/654:655,
1/g/751:754		Major groove platform; stack outside cWW
homologous
IL_4LFB_027
IL_50694.7
IL_8JSG_0811/g/654:658,
1/g/748:754		No text annotation
IL_8JSG_0391/g/659:660,
1/g/745:747		Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_8JSG_0401/g/662:666,
1/g/740:743		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
IL_85033.2
IL_8JSG_0411/g/673:678,
1/g/712:717		No text annotation
homologous
IL_4LFB_030
NA
IL_8JSG_0421/g/684:688,
1/g/699:706		No text annotation
IL_8JSG_0881/g/774:778,
1/g/804:805		Left turn
homologous
IL_6CZR_144
NA
IL_8JSG_0441/g/779:783,
1/g/799:803		tSH-tHW-tHS
homologous
IL_6CZR_145
NA
IL_8JSG_0471/g/887:894,
1/g/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_41756.4
IL_8JSG_0491/g/922:928,
1/g/1389:1395		No text annotation
IL_8JSG_0831/g/922:929,
1/g/1388:1395		No text annotation
IL_8JSG_0531/g/953:954,
1/g/1226:1228		No text annotation
IL_8JSG_0541/g/993:1001,
1/g/1039:1045		No text annotation
IL_8JSG_0551/g/1048:1050,
1/g/1208:1209		No text annotation
IL_8JSG_0841/g/1052:1057,
1/g/1203:1206		No text annotation
IL_8JSG_0571/g/1057:1059,
1/g/1198:1203		No text annotation
IL_8JSG_0581/g/1060:1061,
1/g/1195:1197		Single bulged U
homologous
IL_6CZR_156
NA
IL_8JSG_0591/g/1061:1063,
1/g/1193:1195		Isolated non-canonical cWW pair
geometric
IL_4E48_006
IL_87907.2
IL_8JSG_0611/g/1124:1129,
1/g/1144:1149		No text annotation
IL_8JSG_0621/g/1129:1132,
1/g/1142:1144		No text annotation
IL_8JSG_0631/g/1158:1161,
1/g/1175:1181		No text annotation
IL_8JSG_0851/g/1247:1253,
1/g/1284:1290		No text annotation
IL_8JSG_0651/g/1255:1258,
1/g/1277:1282		180 degree turn
homologous
IL_5J7L_055
IL_11344.2
IL_8JSG_0861/g/1259:1263,
1/g/1272:1276		No text annotation
IL_8JSG_0671/g/1303:1308,
1/g/1329:1334		No text annotation
IL_8JSG_0681/g/1399:1404,
1/g/1497:1504		No text annotation
IL_8JSG_0691/g/1405:1407,
1/g/1494:1496		No text annotation
IL_8JSG_0701/g/1407:1409,
1/g/1491:1494		No text annotation
IL_8JSG_0711/g/1412:1414,
1/g/1486:1488		Isolated non-canonical cWW pair
homologous
IL_4LFB_059
IL_87907.2
IL_8JSG_0721/g/1416:1419,
1/g/1481:1484		Double sheared
homologous
IL_4LFB_060
IL_09705.15
IL_8JSG_0891/g/1430:1435,
1/g/1466:1470		Triple sheared related
homologous
IL_5J7L_063
IL_80231.1
IL_8JSG_0751/g/1440:1442,
1/g/1460:1461		Single bulged A
homologous
IL_5J7L_064
IL_31462.6
IL_8JSG_0761/g/1445:1448,
1/g/1455:1457		No text annotation
homologous
IL_5J7L_065
IL_31531.3

Problematic loops

#loop idProblemSequence
IL_8JSG_078No text annotation
IL_8JSG_005No text annotation
IL_8JSG_010Isolated non-canonical cWW pair
IL_8JSG_011Tandem non-canonical cWW pairs
IL_8JSG_013Isolated non-canonical cWW pair
IL_8JSG_023Isolated non-canonical cWW pair
IL_8JSG_032Isolated cWH basepair
IL_8JSG_033No text annotation
IL_8JSG_038Tandem non-canonical cWW pairs
IL_8JSG_082No text annotation
IL_8JSG_043Other IL
IL_8JSG_045Isolated non-canonical cWW pair
IL_8JSG_046No text annotation
IL_8JSG_048Isolated non-canonical cWW pair
IL_8JSG_050Isolated non-canonical cWW pair
IL_8JSG_051No text annotation
IL_8JSG_052Isolated non-canonical cWW pair
IL_8JSG_056No text annotation
IL_8JSG_060No text annotation
IL_8JSG_064No text annotation
IL_8JSG_066No text annotation
IL_8JSG_073Isolated non-canonical cWW pair
IL_8JSG_074No text annotation
IL_8JSG_077Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8JSG_0091/g/46:47,
1/g/361:367,
1/g/393:395		No text annotation
geometric
J3_8C3A_082
NA
J3_8JSG_0101/g/46:52,
1/g/359:367,
1/g/393:395		No text annotation
homologous
J3_5J7L_050
J3_46317.4
J3_8JSG_0111/g/586:588,
1/g/651:654,
1/g/754:755		No text annotation
geometric
J3_1KUQ_001
J3_56052.5
J3_8JSG_0121/g/586:588,
1/g/651:658,
1/g/748:755		No text annotation
J3_8JSG_0131/g/672:673,
1/g/717:725,
1/g/732:734		No text annotation
homologous
J3_5J7L_003
J3_11934.4
J3_8JSG_0021/g/826:829,
1/g/857:861,
1/g/868:874		No text annotation
homologous
J3_5J7L_004
J3_85054.4
J3_8JSG_0141/g/933:939,
1/g/1344:1350,
1/g/1372:1384		No text annotation
J3_8JSG_0031/g/943:947,
1/g/1234:1237,
1/g/1337:1340		No text annotation
J3_8JSG_0041/g/954:962,
1/g/973:984,
1/g/1221:1226		No text annotation
homologous
J3_4LFB_004
J3_83516.4
J3_8JSG_0051/g/990:993,
1/g/1045:1047,
1/g/1210:1215		No text annotation
J3_8JSG_0181/g/1003:1009,
1/g/1020:1027,
1/g/1034:1037		No text annotation
J3_8JSG_0061/g/1063:1068,
1/g/1107:1113,
1/g/1187:1193		No text annotation
homologous
J3_4LFB_007
J3_08394.3
J3_8JSG_0191/g/1073:1074,
1/g/1083:1087,
1/g/1098:1102		No text annotation
homologous
J3_5J7L_009
J3_76043.3
J3_8JSG_0071/g/1116:1118,
1/g/1155:1158,
1/g/1181:1184		No text annotation
geometric
J3_5J7L_010
J3_82365.4
J3_8JSG_0171/g/1116:1118,
1/g/1155:1161,
1/g/1175:1184		No text annotation
homologous
J3_5J7L_054
J3_17791.2
J3_8JSG_0081/g/1237:1241,
1/g/1296:1303,
1/g/1334:1337		No text annotation
homologous
J3_5J7L_011
J3_37047.6
J4_8JSG_0011/g/115:122,
1/g/239:240,
1/g/286:289,
1/g/311:312		No text annotation
homologous
J4_5J7L_001
J4_35578.3
J4_8JSG_0021/g/141:144,
1/g/178:184,
1/g/193:198,
1/g/219:222		No text annotation
J4_8JSG_0031/g/575:577,
1/g/764:769,
1/g/810:821,
1/g/879:880		No text annotation
homologous
J4_5J7L_003
J4_61885.6
J5_8JSG_0011/g/36:39,
1/g/403:408,
1/g/434:440,
1/g/497:500,
1/g/545:548		No text annotation
J5_8JSG_0021/g/36:39,
1/g/403:408,
1/g/434:442,
1/g/492:500,
1/g/545:548		No text annotation
J5_8JSG_0031/g/58:61,
1/g/106:113,
1/g/314:316,
1/g/337:339,
1/g/350:354		No text annotation
homologous
J5_4LFB_002
J5_59910.6

Problematic loops

#loop idProblemSequence
J3_8JSG_001No text annotation
J3_8JSG_015No text annotation
J3_8JSG_016No text annotation

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