HL_8JSG_015

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

8JSG|1|g|G|693, 8JSG|1|g|A|694

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JSG_015 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.339

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8JSG|1|g|C|689
8JSG|1|g|G|690
8JSG|1|g|G|691
8JSG|1|g|U|692
8JSG|1|g|G|693
8JSG|1|g|A|694
8JSG|1|g|A|695
8JSG|1|g|A|696
8JSG|1|g|U|697
8JSG|1|g|G|698

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain A

Translation initiation factor IF-3

Chain q

Small ribosomal subunit protein uS11