HL_8JSG_019

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JSG_019 not in the Motif Atlas

Homologous match to HL_6CZR_090

Geometric discrepancy: 0.1853

The information below is about HL_6CZR_090

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8JSG|1|g|C|862
8JSG|1|g|U|863
8JSG|1|g|A|864
8JSG|1|g|A|865
8JSG|1|g|C|866
8JSG|1|g|G|867

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 2

Small ribosomal subunit protein bS21

Chain k

Small ribosomal subunit protein uS5

Chain p

Small ribosomal subunit protein uS8