HL_8JSH_018

3D structure

PDB id

8JSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-body-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

8JSH|1|g|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JSH_018 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3369

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8JSH|1|g|C|840
8JSH|1|g|C|841
8JSH|1|g|U|842
8JSH|1|g|U|843
8JSH|1|g|G|844
8JSH|1|g|A|845
8JSH|1|g|G|846

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 1

30S ribosomal protein S18