HL_8JSH_021

3D structure

PDB id

8JSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-body-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GCCUUGUAC

Length

9 nucleotides

Bulged bases

8JSH|1|g|A|1394

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JSH_021 not in the Motif Atlas

Geometric match to HL_7RQB_038

Geometric discrepancy: 0.3317

The information below is about HL_7RQB_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

8JSH|1|g|G|922
8JSH|1|g|C|1388
8JSH|1|g|C|1389
8JSH|1|g|U|1390
8JSH|1|g|U|1391
8JSH|1|g|G|1392
8JSH|1|g|U|1393
8JSH|1|g|A|1394
8JSH|1|g|C|1395

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain k

30S ribosomal protein S5