HL_8K1E_003

3D structure

PDB id

8K1E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a human menRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.23 Å

Loop

Sequence

GCACGGC

Length

7 nucleotides

Bulged bases

8K1E|1|A|A|25||||2_656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K1E_003 not in the Motif Atlas

Geometric match to HL_4LX6_002

Geometric discrepancy: 0.2675

The information below is about HL_4LX6_002

Detailed Annotation

Purine riboswitch

Broad Annotation

Purine riboswitch

Motif group

HL_46333.1

Basepair signature

cWW-R-cSH

Number of instances in this motif group

11

Unit IDs

8K1E|1|A|G|23||||2_656
8K1E|1|A|C|24||||2_656
8K1E|1|A|A|25||||2_656
8K1E|1|A|C|26||||2_656
8K1E|1|A|G|27||||2_656
8K1E|1|A|G|28||||2_656
8K1E|1|A|C|29||||2_656

Current chains

Chain A

RNA (58-MER)

Nearby chains

Chain B

MALAT1-associated small cytoplasmic RNA/MEN beta RNA