HL_8K1E_005

3D structure

PDB id

8K1E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a human menRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.23 Å

Loop

Sequence

GUUCGAGUC

Length

9 nucleotides

Bulged bases

8K1E|1|B|G|45||||3_556, 8K1E|1|B|U|46||||3_556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K1E_005 not in the Motif Atlas

Geometric match to HL_8VT5_003

Geometric discrepancy: 0.1445

The information below is about HL_8VT5_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8K1E|1|B|G|39||||3_556
8K1E|1|B|U|40||||3_556
8K1E|1|B|U|41||||3_556
8K1E|1|B|C|42||||3_556
8K1E|1|B|G|43||||3_556
8K1E|1|B|A|44||||3_556
8K1E|1|B|G|45||||3_556
8K1E|1|B|U|46||||3_556
8K1E|1|B|C|47||||3_556

Current chains

Chain B

RNA (58-MER)

Nearby chains

Chain A

MALAT1-associated small cytoplasmic RNA/MEN beta RNA