HL_8K2A_008

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAAAAGA

Length

7 nucleotides

Bulged bases

8K2A|1|L1|G|269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2A_008 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.325

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

8K2A|1|L1|U|264
8K2A|1|L1|A|265
8K2A|1|L1|A|266
8K2A|1|L1|A|267
8K2A|1|L1|A|268
8K2A|1|L1|G|269
8K2A|1|L1|A|270

Current chains

Chain L1

16S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain Lk

Large ribosomal subunit protein mL37

Chain Sn

Small ribosomal subunit protein mS38