HL_8K2A_013

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAACAGC

Length

8 nucleotides

Bulged bases

8K2A|1|L1|A|440, 8K2A|1|L1|G|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2A_013 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1837

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8K2A|1|L1|G|437
8K2A|1|L1|G|438
8K2A|1|L1|A|439
8K2A|1|L1|A|440
8K2A|1|L1|C|441
8K2A|1|L1|A|442
8K2A|1|L1|G|443
8K2A|1|L1|C|444

Current chains

Chain L1

16S rRNA

Nearby chains

Chain L6

Large ribosomal subunit protein mL63

Chain LJ

Large ribosomal subunit protein uL10m

Chain LP

Large ribosomal subunit protein uL16m