HL_8K2A_019

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUCACAC

Length

8 nucleotides

Bulged bases

8K2A|1|L1|C|689, 8K2A|1|L1|A|693

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2A_019 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3857

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8K2A|1|L1|G|679
8K2A|1|L1|A|680
8K2A|1|L1|U|681
8K2A|1|L1|C|687
8K2A|1|L1|A|688
8K2A|1|L1|C|689
8K2A|1|L1|A|693
8K2A|1|L1|C|694

Current chains

Chain L1

16S rRNA

Nearby chains

Chain LQ

Large ribosomal subunit protein bL17m

Chain LV

39S ribosomal protein L22, mitochondrial

Chain LW

Large ribosomal subunit protein uL23m

Chain Sf

Large ribosomal subunit protein mL65