HL_8K2A_020

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2A_020 not in the Motif Atlas

Geometric match to HL_7RQB_039

Geometric discrepancy: 0.0885

The information below is about HL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38927.5

Basepair signature

cWW-F

Number of instances in this motif group

32

Unit IDs

8K2A|1|L1|C|730
8K2A|1|L1|A|731
8K2A|1|L1|A|732
8K2A|1|L1|G|733

Current chains

Chain L1

16S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain Lk

Large ribosomal subunit protein mL37