HL_8K2A_025

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUACCCUAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2A_025 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.3883

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8K2A|1|L1|G|904
8K2A|1|L1|U|905
8K2A|1|L1|A|906
8K2A|1|L1|C|907
8K2A|1|L1|C|908
8K2A|1|L1|C|909
8K2A|1|L1|U|910
8K2A|1|L1|A|911
8K2A|1|L1|A|912
8K2A|1|L1|C|913

Current chains

Chain L1

16S rRNA

Nearby chains

Chain S1

Small subunit ribosomal RNA; SSU rRNA