HL_8K2A_026

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAAAUAG

Length

9 nucleotides

Bulged bases

8K2A|1|L1|U|948

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2A_026 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2308

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8K2A|1|L1|C|942
8K2A|1|L1|U|943
8K2A|1|L1|U|944
8K2A|1|L1|A|945
8K2A|1|L1|A|946
8K2A|1|L1|A|947
8K2A|1|L1|U|948
8K2A|1|L1|A|949
8K2A|1|L1|G|950

Current chains

Chain L1

16S rRNA

Nearby chains

Chain LN

Large ribosomal subunit protein uL14m

Chain S1

Small subunit ribosomal RNA; SSU rRNA