HL_8K2A_045

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGCAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2A_045 not in the Motif Atlas

Geometric match to HL_5J7L_191

Geometric discrepancy: 0.1762

The information below is about HL_5J7L_191

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8K2A|1|S1|A|121
8K2A|1|S1|G|122
8K2A|1|S1|C|123
8K2A|1|S1|A|124
8K2A|1|S1|A|125
8K2A|1|S1|U|126

Current chains

Chain S1

12S rRNA

Nearby chains

Chain SO

Small ribosomal subunit protein uS15m

Chain SQ

Small ribosomal subunit protein uS17m