HL_8K2A_047

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2A_047 not in the Motif Atlas

Geometric match to HL_8X5V_003

Geometric discrepancy: 0.3241

The information below is about HL_8X5V_003

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8K2A|1|S1|C|157
8K2A|1|S1|C|158
8K2A|1|S1|C|159
8K2A|1|S1|A|160
8K2A|1|S1|C|161
8K2A|1|S1|G|162

Current chains

Chain S1

12S rRNA

Nearby chains

Chain Sj

Small ribosomal subunit protein mS34