HL_8K2A_050

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGUAAAAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2A_050 not in the Motif Atlas

Geometric match to HL_4LFB_015

Geometric discrepancy: 0.2109

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8K2A|1|S1|U|342
8K2A|1|S1|U|343
8K2A|1|S1|G|344
8K2A|1|S1|U|345
8K2A|1|S1|A|346
8K2A|1|S1|A|347
8K2A|1|S1|A|348
8K2A|1|S1|A|349
8K2A|1|S1|A|350
8K2A|1|S1|A|351

Current chains

Chain S1

12S rRNA

Nearby chains

Chain SG

Small ribosomal subunit protein uS7m

Chain SK

Small ribosomal subunit protein uS11m

Chain SW

Small ribosomal subunit protein bS21m