HL_8K2B_001
3D structure
- PDB id
- 8K2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 39S mitoribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AAACCAUU
- Length
- 8 nucleotides
- Bulged bases
- 8K2B|1|L1|A|54
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K2B_001 not in the Motif Atlas
- Geometric match to HL_4WF9_006
- Geometric discrepancy: 0.122
- The information below is about HL_4WF9_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48677.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
8K2B|1|L1|A|52
8K2B|1|L1|A|53
8K2B|1|L1|A|54
8K2B|1|L1|C|55
8K2B|1|L1|C|56
8K2B|1|L1|A|57
8K2B|1|L1|U|58
8K2B|1|L1|U|59
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain LI
- Large ribosomal subunit protein bL9m
- Chain LO
- Large ribosomal subunit protein uL15m
- Chain Lb
- Large ribosomal subunit protein bL28m
- Chain Ly
- Large ribosomal subunit protein mL51
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