8K2B Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8K2B_001 | 1/L1/52:59 | No text annotation | geometric HL_4WF9_006 HL_48677.1 | |
| HL_8K2B_002 | 1/L1/76:82 | No text annotation | geometric HL_5J7L_141 NA | |
| HL_8K2B_003 | 1/L1/116:121 | GNRA | homologous HL_7RQB_015 NA | |
| HL_8K2B_004 | 1/L1/133:137 | No text annotation | geometric HL_4V9F_003 HL_75660.6 | |
| HL_8K2B_005 | 1/L1/161:169 | No text annotation | homologous HL_7RQB_017 NA | |
| HL_8K2B_006 | 1/L1/177:186 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 NA | |
| HL_8K2B_007 | 1/L1/214:219 | No text annotation | geometric HL_7RQB_011 NA | |
| HL_8K2B_008 | 1/L1/264:270 | No text annotation | ||
| HL_8K2B_009 | 1/L1/284:293 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_8K2B_010 | 1/L1/318:326 | No text annotation | geometric HL_5TBW_021 NA | |
| HL_8K2B_011 | 1/L1/365:370 | No text annotation | homologous HL_4WF9_025 HL_27530.1 | |
| HL_8K2B_013 | 1/L1/437:444 | GNRA | homologous HL_4WF9_027 HL_34789.1 | |
| HL_8K2B_014 | 1/L1/459:466 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_8K2B_015 | 1/L1/505:515 | No text annotation | homologous HL_6PRV_001 HL_20174.1 | |
| HL_8K2B_016 | 1/L1/532:539 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_98423.1 | |
| HL_8K2B_017 | 1/L1/609:616 | No text annotation | geometric HL_5E6M_002 HL_37734.1 | |
| HL_8K2B_018 | 1/L1/649:654 | UNCG | geometric HL_4PMI_004 NA | |
| HL_8K2B_020 | 1/L1/730:733 | Mini UNCG | geometric HL_7A0S_039 HL_90436.1 | |
| HL_8K2B_021 | 1/L1/758:765 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_8K2B_022 | 1/L1/827:837 | No text annotation | homologous HL_5J7L_178 NA | |
| HL_8K2B_023 | 1/L1/848:862 | No text annotation | ||
| HL_8K2B_024 | 1/L1/885:890 | No text annotation | geometric HL_2Y9H_003 HL_75660.6 | |
| HL_8K2B_026 | 1/L1/942:950 | No text annotation | homologous HL_7A0S_048 HL_61418.1 | |
| HL_8K2B_027 | 1/L1/1020:1029 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_8K2B_029 | 1/L1/1142:1150 | No text annotation | homologous HL_7A0S_052 HL_11974.1 | |
| HL_8K2B_030 | 1/L1/1158:1170 | No text annotation | ||
| HL_8K2B_031 | 1/L1/1192:1200 | No text annotation | geometric HL_2ZZM_002 NA | |
| HL_8K2B_032 | 1/L1/1232:1237 | GNRA | geometric HL_2R8S_001 HL_34789.1 | |
| HL_8K2B_033 | 1/L1/1288:1296 | No text annotation | homologous HL_4WF9_056 HL_52011.1 | |
| HL_8K2B_034 | 1/L1/1345:1352 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_8K2B_035 | 1/L1/1368:1374 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_8K2B_036 | 1/L1/1411:1416 | GNRA | homologous HL_7RQB_063 NA | |
| HL_8K2B_037 | 1/L1/1456:1461 | GNRA | geometric HL_2R8S_001 HL_34789.1 | |
| HL_8K2B_038 | 1/L1/1484:1489 | No text annotation | geometric HL_4WRT_001 HL_19413.1 | |
| HL_8K2B_039 | 1/L1/1506:1523 | No text annotation | geometric HL_7A0S_074 NA | |
| HL_8K2B_040 | 1/L1/1546:1554 | No text annotation | geometric HL_7RQB_068 NA | |
| HL_8K2B_042 | 1/L2/1630:1638 | Anticodon loop related | geometric HL_5T83_002 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8K2B_012 | No text annotation | ||
| HL_8K2B_019 | No text annotation | ||
| HL_8K2B_025 | No text annotation | ||
| HL_8K2B_028 | No text annotation | ||
| HL_8K2B_041 | tRNA D-loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8K2B_054 | 1/L1/2:8, 1/L1/127:146 | No text annotation | ||
| IL_8K2B_001 | 1/L1/12:13, 1/L1/98:100 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_8K2B_002 | 1/L1/69:75, 1/L1/83:88 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5J7L_251 NA | |
| IL_8K2B_003 | 1/L1/175:177, 1/L1/186:188 | Isolated non-canonical cWW pair | homologous IL_5J7L_257 NA | |
| IL_8K2B_004 | 1/L1/207:209, 1/L1/225:227 | Isolated non-canonical cWW pair | geometric IL_3GM7_002 IL_01003.1 | |
| IL_8K2B_005 | 1/L1/210:213, 1/L1/220:224 | No text annotation | ||
| IL_8K2B_006 | 1/L1/234:236, 1/L1/346:348 | Isolated non-canonical cWW pair | homologous IL_4WF9_020 IL_01003.1 | |
| IL_8K2B_007 | 1/L1/236:240, 1/L1/339:346 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_8K2B_008 | 1/L1/243:245, 1/L1/334:336 | Isolated non-canonical cWW pair | geometric IL_5TBW_079 NA | |
| IL_8K2B_009 | 1/L1/255:257, 1/L1/307:309 | Isolated non-canonical cWW contact | geometric IL_5UNE_001 NA | |
| IL_8K2B_010 | 1/L1/259:260, 1/L1/303:305 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_8K2B_011 | 1/L1/278:281, 1/L1/296:298 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_8K2B_012 | 1/L1/315:317, 1/L1/327:331 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_8K2B_013 | 1/L1/376:378, 1/L1/421:424 | No text annotation | geometric IL_4N0T_004 IL_32983.1 | |
| IL_8K2B_014 | 1/L1/387:393, 1/L1/406:412 | No text annotation | geometric IL_5XWG_002 NA | |
| IL_8K2B_015 | 1/L1/475:477, 1/L1/584:585 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_8K2B_016 | 1/L1/479:483, 1/L1/578:582 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_8K2B_017 | 1/L1/498:500, 1/L1/520:522 | Isolated near basepair | geometric IL_2ZI0_001 IL_42997.4 | |
| IL_8K2B_018 | 1/L1/500:503, 1/L1/517:520 | No text annotation | homologous IL_6PRV_001 IL_28482.1 | |
| IL_8K2B_019 | 1/L1/527:530, 1/L1/541:542 | No text annotation | homologous IL_6PRV_002 NA | |
| IL_8K2B_020 | 1/L1/636:643, 1/L1/1004:1010 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_8K2B_021 | 1/L1/659:663, 1/L1/771:778 | No text annotation | ||
| IL_8K2B_055 | 1/L1/707:711, 1/L1/741:749 | No text annotation | ||
| IL_8K2B_056 | 1/L1/714:730, 1/L1/733:738 | No text annotation | ||
| IL_8K2B_022 | 1/L1/786:791, 1/L1/996:998 | No text annotation | ||
| IL_8K2B_023 | 1/L1/797:799, 1/L1/988:990 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.1 | |
| IL_8K2B_024 | 1/L1/800:803, 1/L1/986:987 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_8K2B_057 | 1/L1/800:808, 1/L1/983:987 | No text annotation | homologous IL_5J7L_386 NA | |
| IL_8K2B_025 | 1/L1/803:808, 1/L1/983:986 | Intercalated tWH | geometric IL_5J7L_307 NA | |
| IL_8K2B_026 | 1/L1/808:817, 1/L1/978:983 | No text annotation | ||
| IL_8K2B_027 | 1/L1/820:821, 1/L1/973:975 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_8K2B_028 | 1/L1/878:881, 1/L1/896:897 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_8K2B_029 | 1/L1/882:883, 1/L1/892:895 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_8K2B_030 | 1/L1/926:927, 1/L1/957:960 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_8K2B_031 | 1/L1/927:938, 1/L1/954:957 | No text annotation | ||
| IL_8K2B_032 | 1/L1/1042:1045, 1/L1/1434:1436 | Major groove platform with extra pair | geometric IL_5TBW_091 NA | |
| IL_8K2B_033 | 1/L1/1047:1049, 1/L1/1429:1432 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_8K2B_034 | 1/L1/1060:1062, 1/L1/1259:1260 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_8K2B_035 | 1/L1/1063:1064, 1/L1/1255:1258 | Minor groove platform | homologous IL_5J7L_324 NA | |
| IL_8K2B_036 | 1/L1/1074:1076, 1/L1/1132:1133 | Minor groove platform | geometric IL_7A0S_003 IL_34520.1 | |
| IL_8K2B_038 | 1/L1/1186:1190, 1/L1/1202:1206 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 NA | |
| IL_8K2B_039 | 1/L1/1270:1271, 1/L1/1315:1317 | Single stack bend | homologous IL_7A0S_083 IL_15011.1 | |
| IL_8K2B_040 | 1/L1/1271:1272, 1/L1/1313:1315 | Major groove platform | geometric IL_4V9F_082 IL_48076.7 | |
| IL_8K2B_041 | 1/L1/1273:1276, 1/L1/1310:1312 | Major groove platform with extra pair | homologous IL_7RQB_093 NA | |
| IL_8K2B_042 | 1/L1/1276:1278, 1/L1/1306:1310 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_8K2B_043 | 1/L1/1283:1285, 1/L1/1298:1301 | No text annotation | geometric IL_4P3T_002 NA | |
| IL_8K2B_044 | 1/L1/1285:1287, 1/L1/1297:1298 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_8K2B_045 | 1/L1/1324:1325, 1/L1/1397:1399 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_8K2B_046 | 1/L1/1327:1329, 1/L1/1391:1395 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_8K2B_047 | 1/L1/1329:1330, 1/L1/1388:1391 | No text annotation | geometric IL_5J7L_341 NA | |
| IL_8K2B_048 | 1/L1/1338:1340, 1/L1/1357:1361 | No text annotation | ||
| IL_8K2B_049 | 1/L1/1408:1409, 1/L1/1418:1420 | Single bulged A | homologous IL_5J7L_344 NA | |
| IL_8K2B_050 | 1/L1/1445:1447, 1/L1/1469:1471 | Isolated non-canonical cWW pair | geometric IL_4LFB_061 NA | |
| IL_8K2B_051 | 1/L1/1449:1456, 1/L1/1461:1467 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_8K2B_052 | 1/L1/1478:1482, 1/L1/1491:1493 | C-loop | geometric IL_7RQB_051 NA | |
| IL_8K2B_053 | 1/L2/1627:1629, 1/L2/1639:1641 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_01003.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8K2B_037 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8K2B_006 | 1/L1/2:8, 1/L1/127:133, 1/L1/137:146 | No text annotation | ||
| J3_8K2B_007 | 1/L1/8:11, 1/L1/101:115, 1/L1/122:127 | No text annotation | ||
| J3_8K2B_001 | 1/L1/245:251, 1/L1/313:315, 1/L1/331:334 | No text annotation | homologous J3_8VTW_001 NA | |
| J3_8K2B_002 | 1/L1/260:262, 1/L1/272:276, 1/L1/300:303 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_8K2B_008 | 1/L1/483:500, 1/L1/520:527, 1/L1/542:578 | No text annotation | ||
| J3_8K2B_003 | 1/L1/666:673, 1/L1/753:757, 1/L1/766:768 | No text annotation | ||
| J3_8K2B_004 | 1/L1/673:675, 1/L1/698:705, 1/L1/751:753 | No text annotation | ||
| J3_8K2B_009 | 1/L1/1176:1178, 1/L1/1220:1230, 1/L1/1239:1245 | No text annotation | ||
| J3_8K2B_005 | 1/L1/1334:1337, 1/L1/1362:1364, 1/L1/1378:1384 | No text annotation | homologous J3_7RQB_012 NA | |
| J4_8K2B_001 | 1/L1/644:647, 1/L1/656:657, 1/L1/780:783, 1/L1/1001:1003 | No text annotation | ||
| J4_8K2B_002 | 1/L1/666:675, 1/L1/698:705, 1/L1/751:757, 1/L1/766:768 | No text annotation | ||
| J4_8K2B_003 | 1/L1/822:826, 1/L1/838:843, 1/L1/867:872, 1/L1/967:972 | No text annotation | ||
| J4_8K2B_004 | 1/L1/874:876, 1/L1/899:900, 1/L1/917:926, 1/L1/960:965 | No text annotation | homologous J4_5J7L_026 NA | |
| J5_8K2B_001 | 1/L1/157:159, 1/L1/171:175, 1/L1/188:190, 1/L1/635:636, 1/L1/1010:1011 | No text annotation | homologous J5_7A0S_003 J5_43153.6 | |
| J5_8K2B_002 | 1/L1/195:205, 1/L1/229:233, 1/L1/349:352, 1/L1/601:605, 1/L1/620:630 | No text annotation | ||
| J5_8K2B_005 | 1/L1/1050:1057, 1/L1/1263:1270, 1/L1/1317:1323, 1/L1/1400:1405, 1/L1/1423:1428 | No text annotation | ||
| J5_8K2B_004 | 1/L1/1067:1070, 1/L1/1137:1140, 1/L1/1152:1153, 1/L1/1175:1176, 1/L1/1245:1252 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J6_8K2B_001 | 1/L1/357:362, 1/L1/373:376, 1/L1/424:428, 1/L1/453:457, 1/L1/468:473, 1/L1/587:596 | No text annotation | ||
| J6_8K2B_002 | 1/L1/1067:1070, 1/L1/1137:1140, 1/L1/1152:1153, 1/L1/1175:1178, 1/L1/1220:1230, 1/L1/1239:1252 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J5_8K2B_003 | No text annotation |
Coloring options: