3D structure

PDB id
8K2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human 39S mitoribosome with Tigecycline
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UUCUGCAUAA
Length
10 nucleotides
Bulged bases
8K2B|1|L1|A|185
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8K2B_006 not in the Motif Atlas
Geometric match to HL_5J7L_150
Geometric discrepancy: 0.0959
The information below is about HL_5J7L_150
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

8K2B|1|L1|U|177
8K2B|1|L1|U|178
8K2B|1|L1|C|179
8K2B|1|L1|U|180
8K2B|1|L1|G|181
8K2B|1|L1|C|182
8K2B|1|L1|A|183
8K2B|1|L1|U|184
8K2B|1|L1|A|185
8K2B|1|L1|A|186

Current chains

Chain L1
16s rRNA

Nearby chains

Chain L6
Large ribosomal subunit protein mL63
Chain LC
Large ribosomal subunit protein uL3m
Chain LO
Large ribosomal subunit protein uL15m
Chain LT
Large ribosomal subunit protein bL20m
Chain LU
Large ribosomal subunit protein bL21m
Chain Lf
Large ribosomal subunit protein bL32m

Coloring options:


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