HL_8K2B_011

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCUUAG

Length

6 nucleotides

Bulged bases

8K2B|1|L1|C|366, 8K2B|1|L1|A|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2B_011 not in the Motif Atlas

Homologous match to HL_4WF9_025

Geometric discrepancy: 0.1771

The information below is about HL_4WF9_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

8K2B|1|L1|U|365
8K2B|1|L1|C|366
8K2B|1|L1|U|367
8K2B|1|L1|U|368
8K2B|1|L1|A|369
8K2B|1|L1|G|370

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LO

Large ribosomal subunit protein uL15m