HL_8K2B_017
3D structure
- PDB id
- 8K2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 39S mitoribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UCACCCUA
- Length
- 8 nucleotides
- Bulged bases
- 8K2B|1|L1|C|613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K2B_017 not in the Motif Atlas
- Geometric match to HL_5E6M_002
- Geometric discrepancy: 0.3147
- The information below is about HL_5E6M_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_37734.1
- Basepair signature
- cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8K2B|1|L1|U|609
8K2B|1|L1|C|610
8K2B|1|L1|A|611
8K2B|1|L1|C|612
8K2B|1|L1|C|613
8K2B|1|L1|C|614
8K2B|1|L1|U|615
8K2B|1|L1|A|616
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain L6
- Large ribosomal subunit protein mL63
- Chain LD
- Large ribosomal subunit protein uL4m
- Chain LO
- Large ribosomal subunit protein uL15m
- Chain Lq
- Large ribosomal subunit protein mL43
- Chain Lr
- Large ribosomal subunit protein mL44
- Chain Lx
- Large ribosomal subunit protein mL50
- Chain Ly
- Large ribosomal subunit protein mL51
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