HL_8K2B_021

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

8K2B|1|L1|A|760, 8K2B|1|L1|A|762, 8K2B|1|L1|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2B_021 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0885

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8K2B|1|L1|C|758
8K2B|1|L1|A|759
8K2B|1|L1|A|760
8K2B|1|L1|C|761
8K2B|1|L1|A|762
8K2B|1|L1|C|763
8K2B|1|L1|A|764
8K2B|1|L1|G|765

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LV

39S ribosomal protein L22, mitochondrial

Chain Lh

Large ribosomal subunit protein bL34m

Chain Lo

Large ribosomal subunit protein mL41