HL_8K2B_030

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCAGAACCCAACC

Length

13 nucleotides

Bulged bases

8K2B|1|L1|G|1161, 8K2B|1|L1|A|1162, 8K2B|1|L1|C|1169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2B|1|L1|G|1158
8K2B|1|L1|C|1159
8K2B|1|L1|A|1160
8K2B|1|L1|G|1161
8K2B|1|L1|A|1162
8K2B|1|L1|A|1163
8K2B|1|L1|C|1164
8K2B|1|L1|C|1165
8K2B|1|L1|C|1166
8K2B|1|L1|A|1167
8K2B|1|L1|A|1168
8K2B|1|L1|C|1169
8K2B|1|L1|C|1170

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LP

Large ribosomal subunit protein uL16m

Chain La

Large ribosomal subunit protein bL27m

Chain Ld

Large ribosomal subunit protein uL30m

Chain Ll

Large ribosomal subunit protein mL38

Chain Lv

Large ribosomal subunit protein mL48