HL_8K2B_032

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUAACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2B_032 not in the Motif Atlas

Geometric match to HL_2R8S_001

Geometric discrepancy: 0.0725

The information below is about HL_2R8S_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8K2B|1|L1|A|1232
8K2B|1|L1|U|1233
8K2B|1|L1|A|1234
8K2B|1|L1|A|1235
8K2B|1|L1|C|1236
8K2B|1|L1|U|1237

Current chains

Chain L1

16s rRNA

Nearby chains

Chain Lg

Large ribosomal subunit protein bL33m

Chain Li

Large ribosomal subunit protein bL35m