HL_8K2B_040

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAGAACAG

Length

9 nucleotides

Bulged bases

8K2B|1|L1|A|1547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2B_040 not in the Motif Atlas

Geometric match to HL_7RQB_068

Geometric discrepancy: 0.1143

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8K2B|1|L1|C|1546
8K2B|1|L1|A|1547
8K2B|1|L1|A|1548
8K2B|1|L1|G|1549
8K2B|1|L1|A|1550
8K2B|1|L1|A|1551
8K2B|1|L1|C|1552
8K2B|1|L1|A|1553
8K2B|1|L1|G|1554

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL3m

Chain LQ

Large ribosomal subunit protein bL17m

Chain LS

Large ribosomal subunit protein bL19m

Chain Lf

Large ribosomal subunit protein bL32m