HL_8K2C_002
3D structure
- PDB id
- 8K2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K2C_002 not in the Motif Atlas
- Homologous match to HL_5UD5_002
- Geometric discrepancy: 0.4555
- The information below is about HL_5UD5_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_87306.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8K2C|1|CC|G|30
8K2C|1|CC|C|31
8K2C|1|CC|C|32
8K2C|1|CC|C|33
8K2C|1|CC|A|34
8K2C|1|CC|U|35
8K2C|1|CC|A|36
8K2C|1|CC|A|37
8K2C|1|CC|C|38
Current chains
- Chain CC
- tRNA-Met
Nearby chains
- Chain CE
- Coiled-coil domain-containing protein 124
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SF
- 40S ribosomal protein S5
- Chain SO
- 40S ribosomal protein S14
- Chain Sc
- 40S ribosomal protein S28
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