HL_8K2D_010

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_010 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.0747

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8K2D|1|C1|A|357
8K2D|1|C1|G|358
8K2D|1|C1|U|359
8K2D|1|C1|G|360
8K2D|1|C1|A|361
8K2D|1|C1|U|362

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4A

Chain Lj

Large ribosomal subunit protein eL37A

Chain Ll

Large ribosomal subunit protein eL39