RNA 3D Hub //

8K2D Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8K2D_0011/C1/38:45No text annotation
homologous
HL_8P9A_113
HL_30068.2
HL_8K2D_0021/C1/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_8K2D_0031/C1/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_8K2D_0041/C1/132:136No text annotation
homologous
HL_5TBW_004
NA
HL_8K2D_0051/C1/194:201T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_8K2D_0061/C1/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_8K2D_0071/C1/216:224T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_8K2D_0081/C1/278:287No text annotation
homologous
HL_5TBW_008
NA
HL_8K2D_0091/C1/303:312Pseudoknot geometry
homologous
HL_5TBW_009
NA
HL_8K2D_0101/C1/357:362GNRA
homologous
HL_8C3A_010
NA
HL_8K2D_0111/C1/382:387GNRA
homologous
HL_8C3A_011
NA
HL_8K2D_0121/C1/543:548No text annotation
homologous
HL_5TBW_012
NA
HL_8K2D_0131/C1/599:604GNRA
homologous
HL_5TBW_013
NA
HL_8K2D_0141/C1/640:649T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_8K2D_1151/C1/687:693No text annotation
geometric
HL_5J7L_151
HL_80922.2
HL_8K2D_0161/C1/707:712GNRA
homologous
HL_8C3A_016
NA
HL_8K2D_0171/C1/732:737GNRA
homologous
HL_5TBW_017
NA
HL_8K2D_0181/C1/763:768No text annotation
homologous
HL_8P9A_130
HL_86870.2
HL_8K2D_0191/C1/844:849GNRA
homologous
HL_5TBW_019
NA
HL_8K2D_0201/C1/876:885No text annotation
homologous
HL_5TBW_020
NA
HL_8K2D_0211/C1/910:918No text annotation
homologous
HL_5TBW_021
NA
HL_8K2D_0221/C1/958:963Externally structured
homologous
HL_8C3A_022
NA
HL_8K2D_0231/C1/1023:1029Externally structured
geometric
HL_8C3A_022
NA
HL_8K2D_0241/C1/1076:1083No text annotation
geometric
HL_5TBW_024
NA
HL_8K2D_0251/C1/1126:1132GNRA
homologous
HL_8C3A_025
NA
HL_8K2D_0261/C1/1148:1155No text annotation
homologous
HL_8C3A_026
NA
HL_8K2D_0271/C1/1239:1249No text annotation
homologous
HL_8C3A_027
NA
HL_8K2D_0281/C1/1267:1274GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_8K2D_0301/C1/1403:1408GNRA
homologous
HL_8C3A_030
NA
HL_8K2D_0311/C1/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_8K2D_0321/C1/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_8K2D_0331/C1/1544:1549GNRA variation
homologous
HL_8C3A_033
NA
HL_8K2D_0351/C1/1599:1608No text annotation
homologous
HL_5TBW_035
NA
HL_8K2D_0361/C1/1634:1639GNRA
homologous
HL_8C3A_036
NA
HL_8K2D_0371/C1/1680:1688No text annotation
homologous
HL_8C3A_037
NA
HL_8K2D_0381/C1/1719:1725No text annotation
homologous
HL_5TBW_038
NA
HL_8K2D_0391/C1/1760:1765GNRA related
homologous
HL_5TBW_039
NA
HL_8K2D_0401/C1/1792:1796No text annotation
homologous
HL_8C3A_040
NA
HL_8K2D_0411/C1/1844:1851No text annotation
homologous
HL_8C3A_041
NA
HL_8K2D_0421/C1/1862:1868GNRA
homologous
HL_5TBW_042
NA
HL_8K2D_0431/C1/1923:1928No text annotation
geometric
HL_7RQB_042
NA
HL_8K2D_0451/C1/2110:2114No text annotation
homologous
HL_8C3A_045
NA
HL_8K2D_0461/C1/2135:2145No text annotation
homologous
HL_8C3A_046
NA
HL_8K2D_0471/C1/2164:2170GNRA
homologous
HL_8C3A_047
NA
HL_8K2D_0481/C1/2220:2225GNRA
homologous
HL_5TBW_048
NA
HL_8K2D_0491/C1/2253:2263No text annotation
homologous
HL_5TBW_049
NA
HL_8K2D_0501/C1/2292:2300No text annotation
homologous
HL_8C3A_050
NA
HL_8K2D_0511/C1/2369:2378No text annotation
homologous
HL_8C3A_051
NA
HL_8K2D_0521/C1/2470:2475UNCG
geometric
HL_4PMI_004
HL_34617.5
HL_8K2D_0531/C1/2534:2545No text annotation
HL_8K2D_0541/C1/2568:2573Mini UNCG
geometric
HL_5AH5_007
HL_48778.2
HL_8K2D_0551/C1/2616:2624No text annotation
homologous
HL_8C3A_055
NA
HL_8K2D_0561/C1/2633:2645No text annotation
homologous
HL_5TBW_055
NA
HL_8K2D_0571/C1/2673:2681No text annotation
homologous
HL_8C3A_057
NA
HL_8K2D_0581/C1/2693:2700Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_8K2D_0591/C1/2724:2732No text annotation
homologous
HL_8C3A_059
NA
HL_8K2D_0601/C1/2744:2749GNRA
homologous
HL_8C3A_060
NA
HL_8K2D_0611/C1/2776:2784Pseudoknot geometry
homologous
HL_8C3A_061
NA
HL_8K2D_0621/C1/2840:2848No text annotation
homologous
HL_8C3A_062
NA
HL_8K2D_0631/C1/2897:2904No text annotation
homologous
HL_5TBW_062
NA
HL_8K2D_0641/C1/2920:2926No text annotation
homologous
HL_5TBW_063
NA
HL_8K2D_0651/C1/2963:2968GNRA
homologous
HL_8C3A_065
NA
HL_8K2D_0661/C1/3025:3030GNRA
homologous
HL_8C3A_066
NA
HL_8K2D_0671/C1/3068:3073Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_8K2D_0681/C1/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_8K2D_0691/C1/3194:3197No text annotation
homologous
HL_5TBW_068
NA
HL_8K2D_0701/C1/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_8K2D_0711/C1/3303:3311No text annotation
homologous
HL_8C3A_071
NA
HL_8K2D_0721/C1/3350:3353Mini UNCG
homologous
HL_8C3A_072
NA
HL_8K2D_0731/C2/7:17No text annotation
homologous
HL_8C3A_192
NA
HL_8K2D_0751/C2/154:160GNRA related
homologous
HL_8C3A_194
NA
HL_8K2D_0761/C2/190:195No text annotation
homologous
HL_4V88_189
NA
HL_8K2D_1161/C2/231:234No text annotation
HL_8K2D_0781/C2/243:250T-loop with 1 bulged base
homologous
HL_8C3A_197
NA
HL_8K2D_0791/C2/276:279Mini UNCG
homologous
HL_4V88_192
NA
HL_8K2D_0801/C2/330:338GNRA related
homologous
HL_8C3A_199
NA
HL_8K2D_0811/C2/368:373No text annotation
homologous
HL_4V88_194
NA
HL_8K2D_0821/C2/393:404No text annotation
homologous
HL_8C3A_201
NA
HL_8K2D_0831/C2/414:419UNCG
homologous
HL_8C3A_202
NA
HL_8K2D_0841/C2/450:456No text annotation
homologous
HL_8C3A_203
NA
HL_8K2D_0861/C2/520:532No text annotation
geometric
HL_4V88_199
NA
HL_8K2D_0871/C2/569:574GNRA variation
homologous
HL_8C3A_206
NA
HL_8K2D_0891/C2/764:772No text annotation
homologous
HL_8C3A_208
NA
HL_8K2D_0901/C2/777:783No text annotation
homologous
HL_4V88_204
NA
HL_8K2D_0911/C2/829:843Pseudoknot geometry
homologous
HL_4V88_205
NA
HL_8K2D_0921/C2/900:909No text annotation
homologous
HL_8C3A_211
NA
HL_8K2D_0931/C2/937:942GNRA
homologous
HL_8C3A_212
NA
HL_8K2D_0941/C2/997:1007No text annotation
homologous
HL_4V88_208
NA
HL_8K2D_0951/C2/1055:1064No text annotation
homologous
HL_4V88_209
NA
HL_8K2D_0961/C2/1084:1089GNRA
homologous
HL_8C3A_215
NA
HL_8K2D_0971/C2/1121:1126GNRA
homologous
HL_8C3A_216
NA
HL_8K2D_0981/C2/1188:1197No text annotation
homologous
HL_8C3A_217
NA
HL_8K2D_0991/C2/1238:1247Anticodon loop related
homologous
HL_8C3A_218
NA
HL_8K2D_1001/C2/1296:1301GNRA
homologous
HL_8C3A_219
NA
HL_8K2D_1011/C2/1309:1316T-loop related
homologous
HL_8C3A_220
NA
HL_8K2D_1021/C2/1359:1364No text annotation
homologous
HL_8C3A_221
NA
HL_8K2D_1031/C2/1396:1402No text annotation
homologous
HL_8C3A_222
NA
HL_8K2D_1041/C2/1501:1506GNRA
homologous
HL_8C3A_223
NA
HL_8K2D_1051/C2/1550:1561No text annotation
homologous
HL_8C3A_224
NA
HL_8K2D_1061/C2/1594:1602No text annotation
homologous
HL_4V88_220
NA
HL_8K2D_1081/C2/1778:1783GNRA variation
homologous
HL_8C3A_227
NA
HL_8K2D_1171/C3/47:56No text annotation
homologous
HL_8P9A_186
HL_93438.2
HL_8K2D_1091/C3/69:89No text annotation
homologous
HL_8P9A_187
HL_51921.1
HL_8K2D_1101/C3/108:114No text annotation
homologous
HL_8C3A_076
NA
HL_8K2D_1111/C3/124:129No text annotation
homologous
HL_8C3A_077
NA
HL_8K2D_1121/C4/36:41No text annotation
geometric
HL_5TBW_185
NA
HL_8K2D_1131/C4/88:93GNRA
homologous
HL_8C3A_074
NA

Problematic loops

#loop idProblemSequence
HL_8K2D_114tRNA D-loop
HL_8K2D_015No text annotation
HL_8K2D_029Mini UNCG
HL_8K2D_034No text annotation
HL_8K2D_044No text annotation
HL_8K2D_074No text annotation
HL_8K2D_077No text annotation
HL_8K2D_085No text annotation
HL_8K2D_088No text annotation
HL_8K2D_107No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8K2D_0021/C1/7:8,
1/C3/150:152		Single bulged C
homologous
IL_8C3A_002
NA
IL_8K2D_0031/C1/13:15,
1/C3/144:145		Single bulged U
homologous
IL_8C3A_003
NA
IL_8K2D_0041/C1/27:28,
1/C1/56:58		No text annotation
homologous
IL_8C3A_004
NA
IL_8K2D_0051/C1/31:38,
1/C1/45:53		tSH-tHW-tHH-tHS
homologous
IL_5TBW_005
NA
IL_8K2D_0061/C1/82:89,
1/C1/97:103		No text annotation
homologous
IL_8C3A_006
NA
IL_8K2D_0071/C1/123:124,
1/C1/144:149		No text annotation
homologous
IL_8C3A_007
NA
IL_8K2D_0081/C1/125:127,
1/C1/141:143		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_8K2D_0091/C1/163:165,
1/C1/257:258		Single stack bend
homologous
IL_5TBW_009
NA
IL_8K2D_0101/C1/169:170,
1/C1/248:253		No text annotation
IL_8K2D_0111/C1/177:178,
1/C1/238:241		Minor groove platform
geometric
IL_4KQY_004
IL_02555.1
IL_8K2D_0121/C1/189:191,
1/C1/204:205		Single bulged U
homologous
IL_8C3A_013
NA
IL_8K2D_0131/C1/337:339,
1/C3/25:26		Single bulged A
homologous
IL_5TBW_013
NA
IL_8K2D_0141/C1/376:379,
1/C1/390:403		No text annotation
homologous
IL_5TBW_014
NA
IL_8K2D_0151/C1/404:410,
1/C3/13:19		Triple sheared with non-canonical cWW
homologous
IL_8C3A_016
NA
IL_8K2D_0161/C1/429:431,
1/C1/628:630		Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_8K2D_0181/C1/512:513,
1/C1/577:579		Single bulged A
homologous
IL_8C3A_020
NA
IL_8K2D_0191/C1/517:525,
1/C1/567:573		No text annotation
homologous
IL_5TBW_019
NA
IL_8K2D_0201/C1/531:538,
1/C1/553:561		No text annotation
homologous
IL_5TBW_020
NA
IL_8K2D_0211/C1/668:670,
1/C1/792:794		Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_8K2D_0221/C1/680:684,
1/C1/696:700		No text annotation
homologous
IL_5TBW_022
NA
IL_8K2D_0231/C1/725:728,
1/C1/741:745		No text annotation
homologous
IL_8C3A_025
NA
IL_8K2D_0241/C1/752:753,
1/C1/779:781		Single bulged A
homologous
IL_8C3A_026
NA
IL_8K2D_0251/C1/755:756,
1/C1/775:777		Single bulged U
homologous
IL_5TBW_025
NA
IL_8K2D_0261/C1/758:763,
1/C1/768:773		No text annotation
homologous
IL_8C3A_028
NA
IL_8K2D_0271/C1/803:805,
1/C1/938:940		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_8K2D_0281/C1/805:809,
1/C1/931:938		tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_8K2D_0291/C1/828:829,
1/C1/895:897		Single bulged A
geometric
IL_4V9F_025
IL_31462.6
IL_8K2D_0301/C1/833:834,
1/C1/859:861		Single bulged G
geometric
IL_5TBW_029
NA
IL_8K2D_0311/C1/834:838,
1/C1/855:859		Triple sheared
homologous
IL_8C3A_033
NA
IL_8K2D_0321/C1/869:872,
1/C1/888:890		Major groove platform with extra cWW
homologous
IL_5TBW_031
NA
IL_8K2D_0331/C1/873:875,
1/C1/886:887		Single bulged U
homologous
IL_8C3A_035
NA
IL_8K2D_0341/C1/907:909,
1/C1/919:923		Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_8K2D_0351/C1/954:956,
1/C1/965:967		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_8K2D_0361/C1/969:970,
1/C1/1111:1113		No text annotation
homologous
IL_8C3A_038
NA
IL_8K2D_2431/C1/977:981,
1/C1/1102:1104		No text annotation
IL_8K2D_0381/C1/983:985,
1/C1/1099:1100		Single bulged G
homologous
IL_8C3A_040
NA
IL_8K2D_0391/C1/991:997,
1/C1/1052:1058		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5TBW_038
NA
IL_8K2D_0401/C1/997:998,
1/C1/1050:1052		Minor groove platform
homologous
IL_8C3A_042
NA
IL_8K2D_0411/C1/999:1004,
1/C1/1046:1049		C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_8K2D_0421/C1/1006:1009,
1/C1/1041:1044		Tandem non-canonical cWW pairs
homologous
IL_5TBW_041
NA
IL_8K2D_0431/C1/1009:1011,
1/C1/1039:1041		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_8K2D_0441/C1/1014:1018,
1/C1/1034:1036		Decoding loop related
geometric
IL_2O3X_003
IL_31737.3
IL_8K2D_0461/C1/1069:1071,
1/C1/1087:1089		Isolated non-canonical cWW pair
homologous
IL_8C3A_047
NA
IL_8K2D_0471/C1/1074:1076,
1/C1/1083:1084		Single bulged G
homologous
IL_8C3A_048
NA
IL_8K2D_0481/C1/1120:1122,
1/C1/1136:1138		Isolated non-canonical cWW pair
homologous
IL_5TBW_046
NA
IL_8K2D_0501/C1/1167:1171,
1/C1/1328:1332		UAA/GAN
homologous
IL_8C3A_051
NA
IL_8K2D_0511/C1/1173:1180,
1/C1/1325:1326		SSU/LSU pseudoknot
geometric
IL_5TBW_049
NA
IL_8K2D_0521/C1/1180:1182,
1/C1/1324:1325		Single bulged U
homologous
IL_5TBW_050
NA
IL_8K2D_0531/C1/1187:1194,
1/C1/1314:1319		No text annotation
homologous
IL_8C3A_054
NA
IL_8K2D_0541/C1/1194:1205,
1/C1/1299:1314		No text annotation
geometric
IL_5TBW_052
NA
IL_8K2D_0551/C1/1207:1209,
1/C1/1296:1297		Single bulged U
homologous
IL_8C3A_056
NA
IL_8K2D_0561/C1/1218:1226,
1/C1/1283:1287		Kink-turn
homologous
IL_5TBW_054
NA
IL_8K2D_0571/C1/1234:1238,
1/C1/1250:1254		No text annotation
homologous
IL_8C3A_058
NA
IL_8K2D_0581/C1/1262:1266,
1/C1/1275:1277		Major groove platform with extra cWW
geometric
IL_1MMS_002
IL_51387.2
IL_8K2D_0591/C1/1376:1378,
1/C1/1428:1431		No text annotation
homologous
IL_8C3A_061
NA
IL_8K2D_0601/C1/1385:1387,
1/C1/1420:1421		Single bulged A
homologous
IL_8C3A_062
NA
IL_8K2D_0611/C1/1388:1395,
1/C1/1415:1419		Kink-turn
homologous
IL_8C3A_063
NA
IL_8K2D_0621/C1/1398:1400,
1/C1/1411:1412		Single bulged A
homologous
IL_5TBW_060
NA
IL_8K2D_0631/C1/1444:1450,
1/C1/2354:2359		No text annotation
homologous
IL_8C3A_065
NA
IL_8K2D_0641/C1/1492:1495,
1/C1/1835:1836		Major groove platform; stack outside cWW
geometric
IL_4V9F_050
IL_50694.7
IL_8K2D_0651/C1/1501:1505,
1/C1/1513:1515		C-loop
geometric
IL_4V9F_051
IL_63596.11
IL_8K2D_0661/C1/1532:1536,
1/C1/1585:1590		UAA/GAN
homologous
IL_8C3A_067
NA
IL_8K2D_0671/C1/1562:1564,
1/C1/1576:1577		Single stack bend
geometric
IL_5J7L_249
IL_90729.1
IL_8K2D_0681/C1/1618:1621,
1/C1/1824:1826		No text annotation
homologous
IL_8C3A_070
NA
IL_8K2D_2441/C1/1623:1624,
1/C1/1819:1822		No text annotation
homologous
IL_8C3A_483
NA
IL_8K2D_0701/C1/1627:1631,
1/C1/1811:1816		No text annotation
homologous
IL_8C3A_072
NA
IL_8K2D_0711/C1/1645:1649,
1/C1/1806:1810		Triple sheared
homologous
IL_8C3A_073
NA
IL_8K2D_0721/C1/1661:1663,
1/C1/1786:1788		Isolated non-canonical cWW pair
homologous
IL_8C3A_074
NA
IL_8K2D_0731/C1/1669:1670,
1/C1/1778:1780		Single bulged C
homologous
IL_5TBW_069
NA
IL_8K2D_0741/C1/1670:1671,
1/C1/1776:1778		Single stack bend
geometric
IL_5TBW_070
NA
IL_8K2D_0751/C1/1694:1698,
1/C1/1747:1752		No text annotation
homologous
IL_8C3A_077
NA
IL_8K2D_0761/C1/1702:1707,
1/C1/1737:1743		No text annotation
homologous
IL_8C3A_078
NA
IL_8K2D_0771/C1/1711:1717,
1/C1/1727:1733		Kink-turn
homologous
IL_5TBW_073
NA
IL_8K2D_0781/C1/1883:1889,
1/C1/2346:2349		No text annotation
homologous
IL_8C3A_080
NA
IL_8K2D_0791/C1/1895:1897,
1/C1/2338:2340		No text annotation
homologous
IL_8C3A_081
NA
IL_8K2D_0801/C1/1898:1901,
1/C1/2336:2337		Major groove platform; stack outside cWW
homologous
IL_8C3A_082
NA
IL_8K2D_2451/C1/1898:1906,
1/C1/2333:2337		No text annotation
homologous
IL_8C3A_484
NA
IL_8K2D_0811/C1/1901:1906,
1/C1/2333:2336		Intercalated tWH
geometric
IL_4V9F_062
IL_76758.2
IL_8K2D_0821/C1/1918:1923,
1/C1/1928:1934		No text annotation
homologous
IL_8C3A_084
NA
IL_8K2D_0831/C1/1940:1942,
1/C1/2106:2108		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_8K2D_0841/C1/1947:1948,
1/C1/2098:2101		No text annotation
homologous
IL_8C3A_086
NA
IL_8K2D_0851/C1/2128:2129,
1/C1/2323:2325		Single bulged A
homologous
IL_8C3A_087
NA
IL_8K2D_0861/C1/2156:2161,
1/C1/2173:2180		No text annotation
homologous
IL_8C3A_088
NA
IL_8K2D_0871/C1/2196:2199,
1/C1/2245:2246		Major groove intercalation
homologous
IL_5TBW_084
NA
IL_8K2D_0881/C1/2200:2201,
1/C1/2241:2244		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_8K2D_0891/C1/2204:2206,
1/C1/2237:2238		Single bulged U
geometric
IL_7KVT_002
IL_89505.4
IL_8K2D_0901/C1/2206:2210,
1/C1/2235:2237		Major groove platform with extra pair
homologous
IL_5TBW_087
NA
IL_8K2D_0911/C1/2211:2217,
1/C1/2228:2234		No text annotation
homologous
IL_5TBW_088
NA
IL_8K2D_0921/C1/2276:2277,
1/C1/2307:2310		Bulged stacked bases
geometric
IL_5TBW_089
NA
IL_8K2D_0931/C1/2277:2288,
1/C1/2304:2307		No text annotation
homologous
IL_8C3A_095
NA
IL_8K2D_0941/C1/2391:2394,
1/C1/2986:2988		No text annotation
homologous
IL_8C3A_096
NA
IL_8K2D_0951/C1/2396:2398,
1/C1/2981:2984		No text annotation
homologous
IL_8C3A_097
NA
IL_8K2D_0961/C1/2409:2411,
1/C1/2811:2812		Single bulged U
homologous
IL_8C3A_098
NA
IL_8K2D_0971/C1/2412:2413,
1/C1/2807:2810		Minor groove platform
homologous
IL_5TBW_094
NA
IL_8K2D_0981/C1/2423:2425,
1/C1/2604:2607		No text annotation
homologous
IL_8C3A_100
NA
IL_8K2D_0991/C1/2444:2446,
1/C1/2500:2503		No text annotation
IL_8K2D_1001/C1/2451:2462,
1/C1/2493:2495		No text annotation
IL_8K2D_1011/C1/2466:2469,
1/C1/2476:2489		No text annotation
geometric
IL_1MZP_003
IL_75283.2
IL_8K2D_1021/C1/2520:2526,
1/C1/2584:2587		No text annotation
homologous
IL_8C3A_106
NA
IL_8K2D_1031/C1/2614:2615,
1/C1/2625:2627		Single bulged A
homologous
IL_5TBW_098
NA
IL_8K2D_1041/C1/2666:2668,
1/C1/2686:2690		No text annotation
homologous
IL_8C3A_108
NA
IL_8K2D_1051/C1/2714:2716,
1/C1/2740:2741		Single bulged A
geometric
IL_5WWT_001
IL_31462.6
IL_8K2D_1061/C1/2718:2721,
1/C1/2735:2738		Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_8K2D_1071/C1/2770:2773,
1/C1/2787:2788		Single stack bend with bulge
homologous
IL_5TBW_101
NA
IL_8K2D_1081/C1/2823:2824,
1/C1/2865:2867		Major groove platform
homologous
IL_5TBW_102
NA
IL_8K2D_1091/C1/2824:2826,
1/C1/2863:2865		Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_8K2D_1101/C1/2826:2828,
1/C1/2862:2863		Major groove platform
homologous
IL_5TBW_104
NA
IL_8K2D_1111/C1/2828:2830,
1/C1/2858:2862		Major groove minor groove platform with extra cWW
geometric
IL_4V9F_084
IL_51387.2
IL_8K2D_1121/C1/2835:2839,
1/C1/2849:2853		No text annotation
homologous
IL_8C3A_114
NA
IL_8K2D_1131/C1/2876:2877,
1/C1/2949:2951		Major groove platform
homologous
IL_5TBW_107
NA
IL_8K2D_1141/C1/2879:2881,
1/C1/2943:2947		No text annotation
homologous
IL_8C3A_116
NA
IL_8K2D_1151/C1/2881:2882,
1/C1/2940:2943		Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_8K2D_1161/C1/2889:2891,
1/C1/2912:2914		Isolated non-canonical cWW pair
homologous
IL_5TBW_110
NA
IL_8K2D_2461/C1/2889:2892,
1/C1/2909:2914		No text annotation
homologous
IL_8P9A_338
IL_07469.2
IL_8K2D_1171/C1/2891:2892,
1/C1/2909:2912		Major groove platform with intercalation
geometric
IL_5TBW_111
NA
IL_8K2D_1181/C1/2918:2920,
1/C1/2926:2928		Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_8K2D_1191/C1/2960:2961,
1/C1/2970:2972		Single bulged A
homologous
IL_5TBW_113
NA
IL_8K2D_1201/C1/3004:3007,
1/C1/3139:3144		Double sheared
homologous
IL_5TBW_114
NA
IL_8K2D_1211/C1/3012:3014,
1/C1/3040:3042		Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_8K2D_1221/C1/3018:3025,
1/C1/3030:3036		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_8K2D_1231/C1/3047:3051,
1/C1/3091:3094		Major groove minor groove platform with tHH
homologous
IL_8C3A_126
NA
IL_8K2D_1241/C1/3054:3059,
1/C1/3084:3088		UAA/GAN related
homologous
IL_5TBW_118
NA
IL_8K2D_1251/C1/3063:3064,
1/C1/3077:3080		No text annotation
homologous
IL_8C3A_128
NA
IL_8K2D_1261/C1/3103:3107,
1/C1/3127:3131		UAA/GAN
homologous
IL_8C3A_129
NA
IL_8K2D_1271/C1/3164:3166,
1/C1/3284:3286		Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_8K2D_1281/C1/3168:3170,
1/C1/3280:3282		Isolated non-canonical cWW pair
homologous
IL_5TBW_122
NA
IL_8K2D_1291/C1/3177:3179,
1/C1/3210:3211		Single bulged A
homologous
IL_5TBW_123
NA
IL_8K2D_1301/C1/3179:3188,
1/C1/3204:3210		No text annotation
geometric
IL_5TBW_124
NA
IL_8K2D_1311/C1/3193:3194,
1/C1/3197:3199		Single bulged U
geometric
IL_5TBW_125
NA
IL_8K2D_1321/C1/3225:3229,
1/C1/3258:3260		No text annotation
homologous
IL_8C3A_133
NA
IL_8K2D_1331/C1/3233:3235,
1/C1/3252:3254		Isolated non-canonical cWW pair
homologous
IL_5TBW_127
NA
IL_8K2D_1341/C1/3235:3238,
1/C1/3249:3252		Tandem non-canonical cWW pairs
geometric
IL_4UYK_003
IL_77658.1
IL_8K2D_1351/C1/3300:3303,
1/C1/3311:3314		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_8K2D_1361/C1/3318:3320,
1/C1/3387:3388		Single bulged U
geometric
IL_7RQB_008
NA
IL_8K2D_1371/C1/3324:3325,
1/C1/3381:3383		Single bulged U
homologous
IL_5TBW_131
NA
IL_8K2D_1381/C1/3328:3330,
1/C1/3373:3378		No text annotation
homologous
IL_8C3A_138
NA
IL_8K2D_1391/C1/3332:3337,
1/C1/3367:3371		No text annotation
homologous
IL_8C3A_139
NA
IL_8K2D_1401/C1/3340:3342,
1/C1/3363:3364		No text annotation
IL_8K2D_1411/C1/3342:3345,
1/C1/3360:3363		Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_8K2D_1421/C1/3349:3350,
1/C1/3353:3356		Multiple bulged bases
geometric
IL_5TBW_136
NA
IL_8K2D_1431/C2/24:26,
1/C2/600:601		Single bulged C
homologous
IL_4V88_384
NA
IL_8K2D_1441/C2/35:37,
1/C2/471:473		Isolated non-canonical cWW pair
geometric
IL_4V88_385
NA
IL_8K2D_1451/C2/37:41,
1/C2/466:471		Triple sheared related
homologous
IL_4V88_386
NA
IL_8K2D_1461/C2/42:48,
1/C2/431:433		No text annotation
homologous
IL_4V88_387
NA
IL_8K2D_1471/C2/50:52,
1/C2/428:429		Minor groove platform
homologous
IL_4V88_388
NA
IL_8K2D_1481/C2/58:63,
1/C2/87:89		No text annotation
homologous
IL_4V88_389
NA
IL_8K2D_1491/C2/64:69,
1/C2/82:86		No text annotation
homologous
IL_8C3A_398
NA
IL_8K2D_1501/C2/109:112,
1/C2/302:305		Tandem non-canonical cWW pairs
homologous
IL_8C3A_399
NA
IL_8K2D_1511/C2/113:116,
1/C2/300:301		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_8K2D_1521/C2/117:122,
1/C2/295:299		No text annotation
homologous
IL_8C3A_401
NA
IL_8K2D_2471/C2/144:149,
1/C2/165:171		tWH-tWH-tHW-tHW
geometric
IL_4LFB_009
IL_12745.1
IL_8K2D_1541/C2/150:152,
1/C2/162:164		Isolated non-canonical cWW contact
homologous
IL_4V88_395
NA
IL_8K2D_1551/C2/186:190,
1/C2/195:199		Triple sheared
geometric
IL_5J7L_274
IL_17948.2
IL_8K2D_1561/C2/204:206,
1/C2/259:263		Major groove platform with extra cWW
homologous
IL_8C3A_405
NA
IL_8K2D_1571/C2/206:208,
1/C2/257:259		Isolated non-canonical cWW pair
geometric
IL_2O3Y_001
IL_28037.2
IL_8K2D_1581/C2/265:267,
1/C2/288:289		Single bulged A
homologous
IL_4V88_399
NA
IL_8K2D_1591/C2/270:273,
1/C2/283:285		No text annotation
homologous
IL_4V88_400
NA
IL_8K2D_1601/C2/275:276,
1/C2/279:281		Single bulged U
homologous
IL_8C3A_409
NA
IL_8K2D_1611/C2/311:316,
1/C2/348:355		Kink-turn with non-sequential stacking
homologous
IL_8C3A_410
NA
IL_8K2D_1621/C2/318:323,
1/C2/345:346		No text annotation
homologous
IL_8C3A_411
NA
IL_8K2D_1631/C2/363:365,
1/C2/376:381		No text annotation
homologous
IL_8C3A_412
NA
IL_8K2D_1641/C2/389:391,
1/C2/406:408		Isolated cWH basepair
homologous
IL_8C3A_413
NA
IL_8K2D_1651/C2/411:413,
1/C2/420:422		Isolated non-canonical cWW pair
homologous
IL_8C3A_414
NA
IL_8K2D_1661/C2/439:441,
1/C2/463:464		Single bulged U
homologous
IL_8C3A_415
NA
IL_8K2D_1671/C2/443:447,
1/C2/460:461		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_8K2D_1681/C2/447:448,
1/C2/458:460		Single bulged G
homologous
IL_8C3A_417
NA
IL_8K2D_1691/C2/481:482,
1/C2/505:507		Single bulged A
homologous
IL_4V88_409
NA
IL_8K2D_1701/C2/514:516,
1/C2/536:543		No text annotation
geometric
IL_7ELQ_002
IL_07785.1
IL_8K2D_2481/C2/517:518,
1/C2/533:535		Minor groove platform
homologous
IL_8P9A_401
IL_51454.3
IL_8K2D_1721/C2/518:520,
1/C2/532:533		Minor groove platform
homologous
IL_4V88_412
NA
IL_8K2D_1731/C2/550:557,
1/C2/587:588		SSU/LSU pseudoknot
homologous
IL_8C3A_423
NA
IL_8K2D_1741/C2/557:559,
1/C2/586:587		Single bulged U
geometric
IL_5TBW_146
NA
IL_8K2D_1751/C2/562:568,
1/C2/575:583		Kink-turn related
homologous
IL_4V88_415
NA
IL_8K2D_1761/C2/616:622,
1/C2/1104:1105		No text annotation
homologous
IL_8C3A_426
NA
IL_8K2D_1771/C2/624:626,
1/C2/973:975		Isolated non-canonical cWW pair
homologous
IL_8C3A_427
NA
IL_8K2D_1781/C2/627:631,
1/C2/968:972		tSH-tHW-tHS
homologous
IL_8C3A_428
NA
IL_8K2D_1791/C2/646:648,
1/C2/686:688		Isolated non-canonical cWW pair
homologous
IL_4V88_419
NA
IL_8K2D_1801/C2/746:747,
1/C2/802:805		Major groove minor groove platform; mini C-loop
homologous
IL_8C3A_430
NA
IL_8K2D_1811/C2/748:750,
1/C2/799:801		Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_8K2D_1821/C2/751:759,
1/C2/791:798		No text annotation
homologous
IL_4V88_425
NA
IL_8K2D_1831/C2/819:822,
1/C2/850:852		Isolated non-canonical cWW pair
homologous
IL_4V88_426
NA
IL_8K2D_1841/C2/865:866,
1/C2/962:965		Major groove platform; stack outside cWW
homologous
IL_4V88_428
NA
IL_8K2D_2551/C2/868:869,
1/C2/958:960		Single bulged U
geometric
IL_7KVT_002
IL_89505.4
IL_8K2D_2501/C2/871:873,
1/C2/954:956		Isolated non-canonical cWW pair
geometric
IL_2R8S_001
IL_87907.2
IL_8K2D_1871/C2/874:878,
1/C2/950:953		Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_8K2D_1881/C2/885:888,
1/C2/924:927		Tandem non-canonical cWW pairs
homologous
IL_8C3A_439
NA
IL_8K2D_1891/C2/893:895,
1/C2/917:919		Isolated non-canonical cWW pair
geometric
IL_5ZTM_002
IL_28037.2
IL_8K2D_2511/C2/893:899,
1/C2/910:919		No text annotation
homologous
IL_8P9A_422
IL_57741.1
IL_8K2D_1901/C2/895:899,
1/C2/910:917		Kink-turn
homologous
IL_4V88_434
NA
IL_8K2D_1911/C2/985:990,
1/C2/1014:1016		Other IL
homologous
IL_4V88_435
NA
IL_8K2D_1921/C2/990:994,
1/C2/1010:1014		tSH-tHW-tHS
geometric
IL_4LFB_033
IL_17136.7
IL_8K2D_1931/C2/1034:1036,
1/C2/1095:1101		No text annotation
homologous
IL_8C3A_443
NA
IL_8K2D_1941/C2/1041:1044,
1/C2/1074:1077		Tandem non-canonical cWW pairs
homologous
IL_8C3A_444
NA
IL_8K2D_1951/C2/1051:1053,
1/C2/1066:1067		Single bulged U
homologous
IL_4V88_439
NA
IL_8K2D_1961/C2/1111:1118,
1/C2/1129:1134		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_8K2D_1971/C2/1146:1147,
1/C2/1630:1632		Single bulged A
homologous
IL_8C3A_447
NA
IL_8K2D_1981/C2/1149:1151,
1/C2/1627:1628		Single bulged G
homologous
IL_8C3A_448
NA
IL_8K2D_1991/C2/1157:1160,
1/C2/1617:1621		C-loop
homologous
IL_8C3A_449
NA
IL_8K2D_2001/C2/1173:1175,
1/C2/1464:1466		Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_8K2D_2011/C2/1178:1179,
1/C2/1459:1461		Minor groove platform
homologous
IL_4V88_445
NA
IL_8K2D_2021/C2/1213:1215,
1/C2/1448:1450		Isolated non-canonical cWW pair
homologous
IL_8C3A_452
NA
IL_8K2D_2031/C2/1224:1233,
1/C2/1252:1259		No text annotation
homologous
IL_8P9A_470
IL_28304.1
IL_8K2D_2041/C2/1234:1236,
1/C2/1249:1251		No text annotation
homologous
IL_4V88_448
NA
IL_8K2D_2051/C2/1268:1270,
1/C2/1440:1441		Single bulged U
homologous
IL_8C3A_455
NA
IL_8K2D_2061/C2/1272:1276,
1/C2/1436:1438		No text annotation
homologous
IL_8C3A_456
NA
IL_8K2D_2521/C2/1272:1278,
1/C2/1430:1438		No text annotation
homologous
IL_8P9A_439
IL_86012.1
IL_8K2D_2071/C2/1276:1278,
1/C2/1430:1436		Minor groove platform with extra cWW
geometric
IL_4V88_451
NA
IL_8K2D_2081/C2/1280:1281,
1/C2/1426:1428		Single bulged A
homologous
IL_8C3A_458
NA
IL_8K2D_2091/C2/1290:1292,
1/C2/1323:1325		Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_8K2D_2101/C2/1306:1308,
1/C2/1317:1318		Minor groove platform
homologous
IL_8C3A_460
NA
IL_8K2D_2111/C2/1339:1342,
1/C2/1383:1385		Isolated non-canonical cWW pair
homologous
IL_4V88_455
NA
IL_8K2D_2121/C2/1345:1348,
1/C2/1377:1380		Minor groove platform
homologous
IL_4V88_456
NA
IL_8K2D_2131/C2/1352:1354,
1/C2/1369:1373		Isolated non-canonical cWW pair
homologous
IL_4V88_457
NA
IL_8K2D_2141/C2/1389:1391,
1/C2/1407:1412		Major groove platform; stack outside cWW
geometric
IL_4V88_458
NA
IL_8K2D_2151/C2/1480:1487,
1/C2/1519:1527		No text annotation
homologous
IL_8C3A_466
NA
IL_8K2D_2161/C2/1488:1494,
1/C2/1513:1518		180 degree turn
homologous
IL_4V88_460
NA
IL_8K2D_2171/C2/1495:1498,
1/C2/1509:1512		Tandem non-canonical cWW pairs
homologous
IL_4V88_461
NA
IL_8K2D_2541/C2/1540:1545,
1/C2/1566:1571		No text annotation
homologous
IL_8C3A_507
NA
IL_8K2D_2191/C2/1636:1638,
1/C2/1764:1767		No text annotation
geometric
IL_5J7L_058
IL_61438.4
IL_8K2D_2201/C2/1638:1641,
1/C2/1760:1764		No text annotation
homologous
IL_8C3A_471
NA
IL_8K2D_2211/C2/1642:1644,
1/C2/1757:1759		Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_8K2D_2221/C2/1644:1647,
1/C2/1753:1757		No text annotation
homologous
IL_8CRE_469
IL_11399.2
IL_8K2D_2231/C2/1650:1652,
1/C2/1748:1750		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_8K2D_2241/C2/1653:1656,
1/C2/1744:1747		Double sheared
homologous
IL_8C3A_475
NA
IL_8K2D_2251/C2/1656:1658,
1/C2/1743:1744		Single bulged U
geometric
IL_4V88_469
NA
IL_8K2D_2261/C2/1665:1667,
1/C2/1734:1736		Isolated non-canonical cWW pair
homologous
IL_8C3A_477
NA
IL_8K2D_2271/C2/1669:1672,
1/C2/1729:1732		Double sheared
geometric
IL_4V88_471
NA
IL_8K2D_2281/C2/1672:1674,
1/C2/1727:1729		Isolated non-canonical cWW pair
homologous
IL_4V88_472
NA
IL_8K2D_2291/C2/1675:1678,
1/C2/1723:1726		Tandem non-canonical cWW pairs
geometric
IL_4V88_473
NA
IL_8K2D_2301/C2/1678:1682,
1/C2/1719:1723		Triple sheared
homologous
IL_8C3A_480
NA
IL_8K2D_2321/C3/44:64,
1/C3/96:100		No text annotation
geometric
IL_5TBW_144
NA
IL_8K2D_2331/C3/64:66,
1/C3/93:96		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA
IL_8K2D_2341/C3/68:69,
1/C3/89:91		Single bulged U
homologous
IL_5TBW_146
NA
IL_8K2D_2351/C4/15:16,
1/C4/63:65		Single bulged A
homologous
IL_8C3A_143
NA
IL_8K2D_2361/C4/21:27,
1/C4/53:58		Minor groove platform related
homologous
IL_8C3A_144
NA
IL_8K2D_2371/C4/28:29,
1/C4/49:52		Minor groove platform
geometric
IL_5TBW_374
NA
IL_8K2D_2381/C4/29:30,
1/C4/47:49		Single stack bend
homologous
IL_8C3A_146
NA
IL_8K2D_2391/C4/32:36,
1/C4/41:45		No text annotation
homologous
IL_8C3A_147
NA
IL_8K2D_2401/C4/72:80,
1/C4/100:106		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_8K2D_2411/C4/84:87,
1/C4/94:96		Isolated non-canonical cWW pair
homologous
IL_8C3A_149
NA

Problematic loops

#loop idProblemSequence
IL_8K2D_001Isolated cWH basepair
IL_8K2D_242No text annotation
IL_8K2D_017Kink-turn related
IL_8K2D_037No text annotation
IL_8K2D_045Isolated non-canonical cWW pair
IL_8K2D_049No text annotation
IL_8K2D_069No text annotation
IL_8K2D_153No text annotation
IL_8K2D_171Minor groove platform with extra cWW
IL_8K2D_249Isolated non-canonical cWW pair
IL_8K2D_185Isolated non-canonical cWW pair
IL_8K2D_186Tandem non-canonical cWW pairs
IL_8K2D_253No text annotation
IL_8K2D_218No text annotation
IL_8K2D_231Isolated cWS basepair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8K2D_0011/C1/113:123,
1/C1/149:158,
1/C1/263:267		No text annotation
homologous
J3_8P9A_042
J3_19664.1
J3_8K2D_0221/C1/113:124,
1/C1/144:158,
1/C1/263:267		No text annotation
J3_8K2D_0231/C1/185:189,
1/C1/205:214,
1/C1/226:231		No text annotation
homologous
J3_8P9A_044
J3_75408.1
J3_8K2D_0241/C1/340:356,
1/C1/363:368,
1/C3/21:24		No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_8K2D_0251/C1/369:376,
1/C1/403:404,
1/C3/19:20		No text annotation
geometric
J3_8C3A_048
NA
J3_8K2D_0261/C1/369:379,
1/C1/390:404,
1/C3/19:20		No text annotation
homologous
J3_8P9A_047
J3_92134.2
J3_8K2D_0271/C1/502:503,
1/C1/588:597,
1/C1/606:611		No text annotation
homologous
J3_8P9A_048
J3_83726.1
J3_8K2D_0021/C1/814:820,
1/C1/905:907,
1/C1/923:926		No text annotation
homologous
J3_8C3A_003
NA
J3_8K2D_0031/C1/829:831,
1/C1/863:867,
1/C1/892:895		No text annotation
homologous
J3_8C3A_004
NA
J3_8K2D_0281/C1/986:987,
1/C1/1062:1066,
1/C1/1092:1098		No text annotation
homologous
J3_8P9A_051
J3_09667.1
J3_8K2D_0041/C1/1230:1232,
1/C1/1256:1262,
1/C1/1277:1279		No text annotation
homologous
J3_5TBW_007
NA
J3_8K2D_0051/C1/1479:1485,
1/C1/1857:1859,
1/C1/1871:1874		No text annotation
homologous
J3_5TBW_008
NA
J3_8K2D_0061/C1/1488:1491,
1/C1/1837:1843,
1/C1/1852:1854		No text annotation
homologous
J3_5TBW_009
NA
J3_8K2D_0291/C1/1526:1531,
1/C1/1591:1595,
1/C1/1612:1613		No text annotation
homologous
J3_8C3A_052
NA
J3_8K2D_0301/C1/1537:1542,
1/C1/1551:1560,
1/C1/1579:1584		No text annotation
J3_8K2D_0311/C1/1631:1632,
1/C1/1641:1645,
1/C1/1810:1811		No text annotation
homologous
J3_8C3A_054
NA
J3_8K2D_0321/C1/1654:1658,
1/C1/1791:1792,
1/C1/1796:1801		No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_8K2D_0071/C1/2432:2435,
1/C1/2512:2516,
1/C1/2591:2597		No text annotation
geometric
J3_4V9F_007
J3_97609.1
J3_8K2D_0081/C1/2529:2532,
1/C1/2547:2563,
1/C1/2578:2581		No text annotation
homologous
J3_8C3A_009
NA
J3_8K2D_0331/C1/2651:2653,
1/C1/2754:2765,
1/C1/2793:2798		No text annotation
homologous
J3_8C3A_056
NA
J3_8K2D_0091/C1/2664:2666,
1/C1/2690:2692,
1/C1/2701:2706		No text annotation
homologous
J3_8P9A_062
J3_61124.2
J3_8K2D_0101/C1/2886:2889,
1/C1/2914:2916,
1/C1/2930:2936		No text annotation
homologous
J3_8C3A_011
NA
J3_8K2D_0341/C1/3171:3176,
1/C1/3212:3220,
1/C1/3265:3279		No text annotation
homologous
J3_8P9A_064
J3_03190.1
J3_8K2D_0111/C1/3298:3300,
1/C1/3314:3318,
1/C1/3388:3390		No text annotation
homologous
J3_5TBW_015
NA
J3_8K2D_0351/C2/41:42,
1/C2/433:439,
1/C2/464:466		No text annotation
geometric
J3_8C3A_082
NA
J3_8K2D_0361/C2/41:48,
1/C2/431:439,
1/C2/464:466		No text annotation
homologous
J3_8C3A_083
NA
J3_8K2D_0371/C2/213:228,
1/C2/237:243,
1/C2/250:252		No text annotation
J3_8K2D_0381/C2/633:635,
1/C2/861:865,
1/C2/965:966		No text annotation
geometric
J3_4V88_080
NA
J3_8K2D_0391/C2/633:635,
1/C2/861:866,
1/C2/962:966		No text annotation
homologous
J3_8P9A_072
J3_17385.4
J3_8K2D_0121/C2/760:763,
1/C2/773:775,
1/C2/785:790		No text annotation
homologous
J3_4V88_032
NA
J3_8K2D_0131/C2/881:884,
1/C2/928:936,
1/C2/943:947		No text annotation
homologous
J3_4V88_033
NA
J3_8K2D_0141/C2/1037:1039,
1/C2/1079:1083,
1/C2/1090:1094		No text annotation
homologous
J3_4V88_034
NA
J3_8K2D_0151/C2/1161:1164,
1/C2/1581:1587,
1/C2/1609:1616		No text annotation
homologous
J3_8C3A_038
NA
J3_8K2D_0161/C2/1168:1171,
1/C2/1468:1470,
1/C2/1574:1577		No text annotation
homologous
J3_8C3A_039
NA
J3_8K2D_0171/C2/1180:1187,
1/C2/1198:1209,
1/C2/1454:1458		No text annotation
homologous
J3_8C3A_040
NA
J3_8K2D_0181/C2/1215:1220,
1/C2/1263:1267,
1/C2/1442:1448		No text annotation
homologous
J3_8C3A_041
NA
J3_8K2D_0191/C2/1283:1288,
1/C2/1327:1332,
1/C2/1419:1424		No text annotation
homologous
J3_8P9A_080
J3_99563.1
J3_8K2D_0401/C2/1293:1294,
1/C2/1303:1306,
1/C2/1318:1322		No text annotation
homologous
J3_8C3A_085
NA
J3_8K2D_0201/C2/1336:1338,
1/C2/1386:1389,
1/C2/1412:1415		No text annotation
homologous
J3_8C3A_043
NA
J3_8K2D_0411/C2/1336:1338,
1/C2/1386:1391,
1/C2/1407:1415		No text annotation
homologous
J3_8C3A_086
NA
J3_8K2D_0211/C2/1470:1474,
1/C2/1533:1540,
1/C2/1571:1574		No text annotation
homologous
J3_4V88_041
NA
J3_8K2D_0421/C3/44:45,
1/C3/58:64,
1/C3/96:100		No text annotation
homologous
J3_8P9A_067
J3_35667.2
J3_8K2D_0431/C4/9:14,
1/C4/66:67,
1/C4/111:112		No text annotation
homologous
J3_8P9A_066
J3_12003.2
J4_8K2D_0011/C1/112:113,
1/C1/267:272,
1/C1/293:299,
1/C1/316:319		No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_8K2D_0021/C1/185:189,
1/C1/205:208,
1/C1/212:214,
1/C1/226:231		No text annotation
homologous
J4_8P9A_013
J4_12410.1
J4_8K2D_0031/C1/1451:1457,
1/C1/1475:1476,
1/C1/1877:1880,
1/C1/2352:2353		No text annotation
homologous
J4_8P9A_014
J4_87855.1
J4_8K2D_0041/C1/1492:1496,
1/C1/1520:1525,
1/C1/1614:1615,
1/C1/1829:1836		No text annotation
J4_8K2D_0051/C1/1495:1496,
1/C1/1520:1525,
1/C1/1614:1615,
1/C1/1829:1835		No text annotation
J4_8K2D_0061/C1/1674:1675,
1/C1/1693:1694,
1/C1/1752:1753,
1/C1/1772:1773		No text annotation
homologous
J4_8C3A_005
NA
J4_8K2D_0071/C1/2130:2134,
1/C1/2146:2150,
1/C1/2186:2190,
1/C1/2317:2322		No text annotation
homologous
J4_8P9A_017
J4_07509.2
J4_8K2D_0081/C1/2192:2194,
1/C1/2248:2249,
1/C1/2267:2276,
1/C1/2310:2315		No text annotation
homologous
J4_8P9A_018
J4_93343.1
J4_8K2D_0091/C1/2654:2658,
1/C1/2712:2714,
1/C1/2741:2742,
1/C1/2751:2753		No text annotation
J4_8K2D_0101/C1/2654:2658,
1/C1/2712:2716,
1/C1/2740:2742,
1/C1/2751:2753		No text annotation
homologous
J4_8C3A_008
NA
J4_8K2D_0111/C1/3010:3012,
1/C1/3042:3043,
1/C1/3098:3100,
1/C1/3134:3136		No text annotation
homologous
J4_8P9A_020
J4_65356.1
J4_8K2D_0121/C2/99:107,
1/C2/307:309,
1/C2/357:361,
1/C2/383:384		No text annotation
homologous
J4_8C3A_021
NA
J4_8K2D_0131/C2/622:624,
1/C2/975:980,
1/C2/1021:1032,
1/C2/1103:1104		No text annotation
homologous
J4_8P9A_022
J4_61885.6
J5_8K2D_0011/C1/20:22,
1/C3/35:42,
1/C3/102:107,
1/C3/115:116,
1/C3/137:139		No text annotation
homologous
J5_8C3A_001
NA
J5_8K2D_0021/C1/658:663,
1/C1/799:802,
1/C1/941:944,
1/C1/1375:1376,
1/C1/1431:1437		No text annotation
homologous
J5_8C3A_002
NA
J5_8K2D_0031/C1/675:678,
1/C1/702:706,
1/C1/713:721,
1/C1/749:751,
1/C1/782:787		No text annotation
homologous
J5_8C3A_003
NA
J5_8K2D_0041/C1/1906:1914,
1/C1/1938:1939,
1/C1/2109:2110,
1/C1/2114:2122,
1/C1/2331:2333		No text annotation
homologous
J5_8C3A_004
NA
J5_8K2D_0051/C1/2399:2406,
1/C1/2815:2823,
1/C1/2867:2876,
1/C1/2951:2957,
1/C1/2975:2980		No text annotation
J5_8K2D_0061/C1/2416:2419,
1/C1/2611:2614,
1/C1/2627:2628,
1/C1/2650:2651,
1/C1/2798:2804		No text annotation
homologous
J5_8P9A_015
J5_08912.1
J5_8K2D_0071/C2/31:35,
1/C2/473:479,
1/C2/509:514,
1/C2/543:546,
1/C2/592:595		No text annotation
homologous
J5_8C3A_018
NA
J5_8K2D_0081/C2/54:57,
1/C2/90:97,
1/C2/386:388,
1/C2/409:411,
1/C2/422:426		No text annotation
homologous
J5_8C3A_020
NA
J5_8K2D_0091/C2/636:641,
1/C2/693:698,
1/C2/740:744,
1/C2/807:817,
1/C2/854:860		No text annotation
J6_8K2D_0011/C1/22:27,
1/C1/58:68,
1/C1/75:79,
1/C1/106:110,
1/C1/321:331,
1/C3/32:35		No text annotation
J6_8K2D_0021/C1/2416:2419,
1/C1/2611:2614,
1/C1/2627:2628,
1/C1/2650:2653,
1/C1/2754:2765,
1/C1/2793:2804		No text annotation
J7_8K2D_0011/C1/949:954,
1/C1/967:968,
1/C1/1114:1117,
1/C1/1141:1146,
1/C1/1157:1161,
1/C1/1338:1339,
1/C1/1365:1370		No text annotation

Problematic loops

No problematic loops


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