3D structure

PDB id
8K2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGUAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8K2D_013 not in the Motif Atlas
Homologous match to HL_5TBW_013
Geometric discrepancy: 0.2767
The information below is about HL_5TBW_013
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

8K2D|1|C1|C|599
8K2D|1|C1|G|600
8K2D|1|C1|U|601
8K2D|1|C1|A|602
8K2D|1|C1|A|603
8K2D|1|C1|G|604

Current chains

Chain C1
23S rRNA

Nearby chains

Chain LC
Large ribosomal subunit protein uL4A
Chain LF
Large ribosomal subunit protein uL30A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2717 s