HL_8K2D_016

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_016 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.082

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8K2D|1|C1|U|707
8K2D|1|C1|G|708
8K2D|1|C1|A|709
8K2D|1|C1|A|710
8K2D|1|C1|A|711
8K2D|1|C1|G|712

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13A

Chain LQ

Large ribosomal subunit protein eL18A

Chain La

Large ribosomal subunit protein uL15

Chain Li

Large ribosomal subunit protein eL36A