HL_8K2D_029
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUAUGAUG
- Length
- 8 nucleotides
- Bulged bases
- 8K2D|1|C1|U|1348, 8K2D|1|C1|A|1352, 8K2D|1|C1|U|1353, 8K2D|1|C1|G|1354, 8K2D|1|C1|U|1356
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K2D_029 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.2755
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_56334.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 16
Unit IDs
8K2D|1|C1|U|1347
8K2D|1|C1|U|1348
8K2D|1|C1|A|1352
8K2D|1|C1|U|1353
8K2D|1|C1|G|1354
8K2D|1|C1|A|1355
8K2D|1|C1|U|1356
8K2D|1|C1|G|1357
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4A
- Chain LE
- Large ribosomal subunit protein eL6A
- Chain LQ
- Large ribosomal subunit protein eL18A
- Chain Le
- Large ribosomal subunit protein eL32
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